Evidence map›Paper›PMID 25423139›Full record

ArticleLife (Basel, Switzerland)2014

The Effects of Dark Incubation on Cellular Metabolism of the Wild Type Cyanobacterium Synechocystis sp. PCC 6803 and a Mutant Lacking the Transcriptional Regulator cyAbrB2.

Masamitsu Hanai, Yusuke Sato, Atsuko Miyagi, Maki Kawai-Yamada, Kyoko Tanaka, Yasuko Kaneko, Yoshitaka Nishiyama, Yukako Hihara

Open access · goldAbstract read
In one paragraph

Article in Life (Basel, Switzerland), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Expression of the Cyanobacterial FMicrobiology spectrum · 2022
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Masamitsu HanaiGraduate School of Science and Engineering, Saitama University, Saitama 338-8570, Japan. s13mb111@mail.saitama-u.ac.jp.
Yusuke SatoGraduate School of Science and Engineering, Saitama University, Saitama 338-8570, Japan. s14mb115@mail.saitama-u.ac.jp.
Atsuko MiyagiGraduate School of Science and Engineering, Saitama University, Saitama 338-8570, Japan. miyagi@mail.saitama-u.ac.jp.
Maki Kawai-YamadaGraduate School of Science and Engineering, Saitama University, Saitama 338-8570, Japan. mkawai@mail.saitama-u.ac.jp.
Kyoko TanakaGraduate School of Science and Engineering, Saitama University, Saitama 338-8570, Japan. kytanaka@mail.saitama-u.ac.jp.
Yasuko KanekoGraduate School of Science and Engineering, Saitama University, Saitama 338-8570, Japan. yakaneko@mail.saitama-u.ac.jp.
Yoshitaka NishiyamaGraduate School of Science and Engineering, Saitama University, Saitama 338-8570, Japan. nishiyama@molbiol.saitama-u.ac.jp.
Yukako HiharaGraduate School of Science and Engineering, Saitama University, Saitama 338-8570, Japan. hihara@molbiol.saitama-u.ac.jp.
Saitama University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The cyAbrB2 transcriptional regulator is essential for active sugar catabolism in Synechocystis sp. PCC 6803 grown under light conditions. In the light-grown cyabrB2-disrupted mutant, glycogen granules and sugar phosphates corresponding to early steps in the glycolytic pathway accumulated to higher levels than those in the wild-type (WT) strain, whereas the amounts of 3-phosphoglycerate, phosphoenolpyruvate and ribulose 1,5-bisphosphate were significantly lower. We further determined that accumulated glycogen granules in the mutant could be actively catabolized under dark conditions. Differences in metabolite levels between WT and the mutant became less substantial during dark incubation due to a general quantitative decrease in metabolite levels. Notable exceptions, however, were increases in 2-oxoglutarate, histidine, ornithine and citrulline in the WT but not in the mutant. The amounts of cyAbrBs were highly responsive to the availability of light both in transcript and protein levels. When grown under light-dark cycle conditions, diurnal oscillatory pattern of glycogen content of the mutant was lost after the second dark period. These observations indicate that cyAbrB2 is dispensable for activation of sugar catabolism under dark conditions but involved in the proper switching between day and night metabolisms.

Identifiers

PMID25423139
PMCPMC4284466
OpenAlexW1986941922

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.