Evidence map›Paper›PMID 25422323›Full record

ArticleThe Journal of biological chemistry2015

The Mycobacterium tuberculosis Clp gene regulator is required for in vitro reactivation from hypoxia-induced dormancy.

Amanda McGillivray, Nadia A Golden, Deepak Kaushal

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Microorganisms · 2022
    Review
  5. Response to Hypoxia and the Ensuing Dysregulation of Inflammation ImpactsAmerican journal of respiratory and critical care medicine · 2022
    Article
  6. Article
  7. Review
  8. Review
  9. Metabolic Versatility ofMetabolites · 2021
    Review
  10. Review
  11. The sensor kinase MtrB ofThe Journal of biological chemistry · 2019
    Article
  12. Article
  13. Review
  14. Article
  15. Transcriptome Changes ofFrontiers in genetics · 2019
    Article
  16. Communications biology · 2019
    Article
  17. Resuscitation of Dormant "Non-culturable"Frontiers in cellular and infection microbiology · 2019
    Article
  18. Review
  19. Hypoxia Is Not a Main Stress WhenFrontiers in cellular and infection microbiology · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Amanda McGillivrayFrom the Division of Bacteriology and Parasitology, Tulane National Primate Research Center, Covington, Louisiana 70433.
Nadia A GoldenFrom the Division of Bacteriology and Parasitology, Tulane National Primate Research Center, Covington, Louisiana 70433.
Deepak KaushalFrom the Division of Bacteriology and Parasitology, Tulane National Primate Research Center, Covington, Louisiana 70433 dkaushal@tulane.edu.
Tulane University · US

Funding

Tulane NPRC SPF Sheltered Outdoor Enclosure ExpansionP51OD011104 · OD · TULANE UNIVERSITY OF LOUISIANA · PI L Lee HAMM · 2012 to 2026
$142.4M
Genetic Requirements for the survival of Tubercle Bacilli in Nonhuman PrimatesR01AI089323 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI KAUSHAL, DEEPAK · 2010 to 2014
$3.2M
NIAID NIH HHS R01 AI089323NIAID NIH HHS R01AI089323NIH HHS P51 OD011104
6 · The paper itself

Abstract

Mycobacterium tuberculosis (Mtb) is the leading cause of death from an infectious disease worldwide and is the causative agent of tuberculosis (Chao, M. C., and Rubin, E. J. (2010) Annu. Rev. Microbiol. 64, 293-311). Throughout infection, Mtb encounters a variety of host pressures. Thus, responding to these host stresses via the induction of multiple regulatory networks is needed for survival within the host. The Clp protease gene regulator, Rv2745c (clgR), is induced in response to environmental stress conditions, implicating its potential role in Mtb pathogenesis. Transcriptional activation of genes downstream of Rv2745c occurs in a condition-dependent manner. Our isogenic Mtb:ΔRv2745c mutant expresses a significantly different phenotype upon reaeration conditions. Transcriptional analysis revealed differential gene expression profiles relative to wild-type Mtb. Rv2745c is strongly induced in response to hypoxic and reaeration conditions, implicating a role of Rv2745c in vivo during both establishment of infection and reactivation. We found dysregulation of downstream genes within both the σ(H)/σ(E) regulon as well as the dosR regulon in the isogenic mutant, Mtb:ΔRv2745c. Upon hypoxic and reaeration conditions, Clp protease induction occurred within wild-type Mtb, indicating that activation of clgR, which subsequently leads to Clp protease induction, is crucial for degradation of misfolded proteins and ultimately survival of Mtb upon specific stress conditions. Our data indicate the diverse response of Rv2745c, σ(H) and σ(E) in response to a variety of stress conditions. Activation of Rv2745c in response to various stress conditions leads to differential activation of downstream genes, indicating the diverse role of Rv2745c and its importance for Mtb survival in vivo.

Indexed as

Gene Expression Regulation, BacterialGenes, RegulatorBacterial ProteinsFatty AcidsGenes, BacterialLungMutationMycobacterium tuberculosisOligonucleotide Array Sequence AnalysisOxidation-ReductionOxygenRNA, BacterialRNA Processing, Post-TranscriptionalSigma FactorStress, PhysiologicalTranscription FactorsBacterial ProteinsFatty AcidsOxygenRNA, BacterialSigma FactorTranscription FactorsclpHypoxiaMycobacterium tuberculosisPost-transcriptional RegulationProteaseReaerationTuberculosis

Identifiers

PMID25422323
PMCPMC4303686
OpenAlexW1994105525

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.