Evidence map›Paper›PMID 25422305›Full record

ArticleJournal of bacteriology2015

The Cpx envelope stress response modifies peptidoglycan cross-linking via the L,D-transpeptidase LdtD and the novel protein YgaU.

Margarita Bernal-Cabas, Juan Alfonso Ayala, Tracy L Raivio

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 88 citations in OpenAlex.

  1. The mecillinam resistome inAntimicrobial agents and chemotherapy · 2026
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  5. Peptidoglycan LD-Transpeptidases.Antibiotics (Basel, Switzerland) · 2025
    Review
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  7. Review
  8. Review
  9. Article
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  11. Article
  12. Article
  13. Nutrient Limitation SensitizesACS infectious diseases · 2023
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Margarita Bernal-CabasDepartment of Biological Sciences, University of Alberta, Edmonton, AB, Canada.
Juan Alfonso AyalaCentro de Biología Molecular Severo Ochoa, Agencia Estatal Consejo Superior de Investigaciones Científicas (CSIC-UAM), Campus de Cantoblanco, Madrid, Spain.
Tracy L RaivioDepartment of Biological Sciences, University of Alberta, Edmonton, AB, Canada traivio@ualberta.ca.
Universidad Autónoma de Madrid · ESUniversity of Alberta · CA

Funding

Canadian Institutes of Health Research 97819
6 · The paper itself

Abstract

The Cpx envelope stress response mediates a complex adaptation to conditions that cause protein misfolding in the periplasm. A recent microarray study demonstrated that Cpx response activation led to changes in the expression of genes known, or predicted, to be involved in cell wall remodeling. We sought to characterize the changes that the cell wall undergoes during activation of the Cpx pathway in Escherichia coli. Luminescent reporters of gene expression confirmed that LdtD, a putative l,d-transpeptidase; YgaU, a protein of unknown function; and Slt, a lytic transglycosylase, are upregulated in response to Cpx-inducing conditions. Phosphorylated CpxR binds to the upstream regions of these genes, which contain putative CpxR binding sites, suggesting that regulation is direct. We show that the activation of the Cpx response causes an increase in the abundance of diaminopimelic acid (DAP)-DAP cross-links that involves LdtD and YgaU. Altogether, our data indicate that changes in peptidoglycan structure are part of the Cpx-mediated adaptation to envelope stress and indicate a role for the uncharacterized gene ygaU in regulating cross-linking.

Indexed as

Gene Expression Regulation, BacterialStress, PhysiologicalAminoacyltransferasesBacterial ProteinsCell WallDNA, BacterialEscherichia coliEscherichia coli ProteinsGlycoside HydrolasesPeptidoglycanPromoter Regions, GeneticProtein BindingAminoacyltransferasesBacterial ProteinsCpxR protein, BacteriaDNA, BacterialEscherichia coli ProteinsGlycoside HydrolasesPeptidoglycanpeptidoglycan transpeptidaseslt protein, E coliYgaU protein, E coli

Identifiers

PMID25422305
PMCPMC4285979
OpenAlexW2095966832

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.