Evidence map›Paper›PMID 25422304›Full record

ArticleJournal of bacteriology2015

The Listeria monocytogenes hibernation-promoting factor is required for the formation of 100S ribosomes, optimal fitness, and pathogenesis.

Benjamin C Kline, Susannah L McKay, William W Tang, Daniel A Portnoy

Abstract read
In one paragraph

Article in Journal of bacteriology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Bidirectional sequestration between a bacterial hibernation factor and a glutamate metabolizing protein.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Review
  9. Article
  10. Transcription regulates ribosome hibernation.Molecular microbiology · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Progression from remodeling to hibernation of ribosomes in zinc-starved mycobacteria.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  16. Article
  17. Article
  18. Review
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Benjamin C KlineDepartment of Molecular and Cell Biology, University of California, Berkeley, California, USA.
Susannah L McKayDepartment of Molecular and Cell Biology, University of California, Berkeley, California, USA.
William W TangDepartment of Molecular and Cell Biology, University of California, Berkeley, California, USA.
Daniel A PortnoyDepartment of Molecular and Cell Biology, University of California, Berkeley, California, USA School of Public Health, University of California, Berkeley, California, USA portnoy@berkeley.edu.

Funding

The role of Listeria cyclic-di-AMP during infection and immunityP01AI063302 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI VANCE, RUSSELL E · 2004 to 2025
$45.5M
Listeria Hemolysis and Escape From a VacuoleR01AI027655 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI DANIEL A PORTNOY · 1993 to 2026
$10.1M
Ribosomal Hibernation facilitates antibiotic tolerance in Listeria monocytogenes.F32AI108253 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI MCKAY, SUSANNAH L · 2013 to 2013
$15k
NIAID NIH HHS 1P01 AI63302NIAID NIH HHS 1R01 AI27655NIAID NIH HHS F32 AI108253NIAID NIH HHS F32 AI108253-01NIAID NIH HHS P01 AI063302NIAID NIH HHS R01 AI027655
6 · The paper itself

Abstract

During exposure to certain stresses, bacteria dimerize pairs of 70S ribosomes into translationally silent 100S particles in a process called ribosome hibernation. Although the biological roles of ribosome hibernation are not completely understood, this process appears to represent a conserved and adaptive response that contributes to optimal survival during stress and post-exponential-phase growth. Hibernating ribosomes are formed by the activity of one or more highly conserved proteins; gammaproteobacteria produce two relevant proteins, ribosome modulation factor (RMF) and hibernation promoting factor (HPF), while most Gram-positive bacteria produce a single, longer HPF protein. Here, we report the formation of 100S ribosomes by an HPF homolog in Listeria monocytogenes. L. monocytogenes 100S ribosomes were observed by sucrose density gradient centrifugation of bacterial extracts during mid-logarithmic phase, peaked at the transition to stationary phase, and persisted at lower levels during post-exponential-phase growth. 100S ribosomes were undetectable in bacteria carrying an hpf::Himar1 transposon insertion, indicating that HPF is required for ribosome hibernation in L. monocytogenes. Additionally, epitope-tagged HPF cosedimented with 100S ribosomes, supporting its previously described direct role in 100S formation. We examined hpf mRNA by quantitative PCR (qPCR) and identified several conditions that upregulated its expression, including carbon starvation, heat shock, and exposure to high concentrations of salt or ethanol. Survival of HPF-deficient bacteria was impaired under certain conditions both in vitro and during animal infection, providing evidence for the biological relevance of 100S ribosome formation.

Indexed as

Stress, PhysiologicalAnimalsBacterial ProteinsCentrifugation, Density GradientDNA Transposable ElementsGene Expression ProfilingGene Knockout TechniquesListeria monocytogenesListeriosisMicrobial ViabilityMutagenesis, InsertionalReal-Time Polymerase Chain ReactionRibosomal ProteinsRibosomesVirulenceBacterial ProteinsDNA Transposable ElementsRibosomal Proteins

Identifiers

PMID25422304
PMCPMC4285973

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.