Evidence map›Paper›PMID 25419663›Full record

ArticlePloS one2014

The genetic architecture of climatic adaptation of tropical cattle.

Laercio R Porto-Neto, Antonio Reverter, Kishore C Prayaga, Eva K F Chan, David J Johnston, Rachel J Hawken, Geoffry Fordyce, Jose Fernando Garcia, Tad S Sonstegard, Sunduimijid Bolormaa and 5 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 162 citations in OpenAlex.

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19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 3 countries.

Laercio R Porto-NetoCSIRO Food Futures Flagship, Queensland Bioscience Precinct, St. Lucia, QLD, Australia; CSIRO Animal, Food and Health Science, Queensland Bioscience Precinct, St. Lucia, QLD, Australia.
Antonio ReverterCSIRO Food Futures Flagship, Queensland Bioscience Precinct, St. Lucia, QLD, Australia; CSIRO Animal, Food and Health Science, Queensland Bioscience Precinct, St. Lucia, QLD, Australia.
Kishore C PrayagaZoetis Incorporated, Parkville, VIC, Australia.
Eva K F ChanGarvan Institute of Medical Research, Darlinghurst, Sydney, NSW, Australia.
David J JohnstonAnimal Genetics and Breeding Unit, University of New England, Armidale, NSW, Australia.
Rachel J HawkenCobb-Vantress Inc., Siloam Springs, Arizona, United States of America.
Geoffry FordyceQueensland Alliance for Agriculture and Food Innovation, The University of Queensland, St. Lucia, QLD, Australia.
Jose Fernando GarciaFaculdade de Medicina Veterinaria de Araçatuba, (UNESP) Univ Estadual Paulista, Araçatuba, São Paulo, Brazil.
Tad S SonstegardUnited States Department of Agriculture, Agricultural Research Service, Bovine Functional Genomics Laboratory, Beltsville, Maryland, United States of America.
Sunduimijid BolormaaDepartment of Primary Industries Victoria, Bundoora, VIC, Australia.
Michael E GoddardDepartment of Primary Industries Victoria, Bundoora, VIC, Australia.
Heather M BurrowCSIRO Animal, Food and Health Science, Queensland Bioscience Precinct, St. Lucia, QLD, Australia.
John M HenshallCSIRO Food Futures Flagship, Queensland Bioscience Precinct, St. Lucia, QLD, Australia; CSIRO Animal, Food and Health Science, Queensland Bioscience Precinct, St. Lucia, QLD, Australia.
Sigrid A LehnertCSIRO Food Futures Flagship, Queensland Bioscience Precinct, St. Lucia, QLD, Australia; CSIRO Animal, Food and Health Science, Queensland Bioscience Precinct, St. Lucia, QLD, Australia.
William BarendseCSIRO Animal, Food and Health Science, Queensland Bioscience Precinct, St. Lucia, QLD, Australia.
Animal, Food and Health Sciences · AUAgricultural Research Service · USCommonwealth Scientific and Industrial Research Organisation · AUGarvan Institute of Medical Research · AUUniversidade Estadual Paulista (Unesp) · BRUniversity of New England · AUUniversity of Queensland · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Adaptation of global food systems to climate change is essential to feed the world. Tropical cattle production, a mainstay of profitability for farmers in the developing world, is dominated by heat, lack of water, poor quality feedstuffs, parasites, and tropical diseases. In these systems European cattle suffer significant stock loss, and the cross breeding of taurine x indicine cattle is unpredictable due to the dilution of adaptation to heat and tropical diseases. We explored the genetic architecture of ten traits of tropical cattle production using genome wide association studies of 4,662 animals varying from 0% to 100% indicine. We show that nine of the ten have genetic architectures that include genes of major effect, and in one case, a single location that accounted for more than 71% of the genetic variation. One genetic region in particular had effects on parasite resistance, yearling weight, body condition score, coat colour and penile sheath score. This region, extending 20 Mb on BTA5, appeared to be under genetic selection possibly through maintenance of haplotypes by breeders. We found that the amount of genetic variation and the genetic correlations between traits did not depend upon the degree of indicine content in the animals. Climate change is expected to expand some conditions of the tropics to more temperate environments, which may impact negatively on global livestock health and production. Our results point to several important genes that have large effects on adaptation that could be introduced into more temperate cattle without detrimental effects on productivity.

Indexed as

Climate ChangeTropical ClimateAdaptation, PhysiologicalAlgorithmsAnimalsBreedingCattleEnvironmentFemaleGene ExpressionGene FrequencyGenetic VariationGenomeGenotypeHaplotypesLinkage Disequilibrium

Identifiers

PMID25419663
PMCPMC4242650
OpenAlexW2034226738

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.