Evidence map›Paper›PMID 25419571›Full record

ArticlePloS one2014

Mechanistic studies of the genetically encoded fluorescent protein voltage probe ArcLight.

Zhou Han, Lei Jin, Fuyi Chen, Joseph J Loturco, Lawrence B Cohen, Alexey Bondar, Josef Lazar, Vincent A Pieribone

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Article
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  4. Review
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  12. Directionality of light absorption and emission in representative fluorescent proteins.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  13. Review
  14. Genetic voltage indicators.BMC biology · 2019
    Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Zhou HanThe John B. Pierce Laboratory, Inc., New Haven, Connecticut, United States of America; Department of Cellular and Molecular Physiology, Yale University School of Medicine, New Haven, Connecticut, United States of America.
Lei JinDepartment of Cellular and Molecular Physiology, Yale University School of Medicine, New Haven, Connecticut, United States of America.
Fuyi ChenDepartment of Physiology and Neurobiology, University of Connecticut, Storrs, Connecticut, United States of America.
Joseph J LoturcoDepartment of Physiology and Neurobiology, University of Connecticut, Storrs, Connecticut, United States of America.
Lawrence B CohenDepartment of Cellular and Molecular Physiology, Yale University School of Medicine, New Haven, Connecticut, United States of America; Center for Functional Connectomics, Korea Institute of Science and Technology, Seoul, Republic of Korea.
Alexey BondarInstitute of Nanobiology and Structural Biology GCRC, Academy of Sciences of the Czech Republic, Zamek 136, Nove Hrady, Czech Republic; Department of Molecular Biology, University of South Bohemia, Branisovska 31, Ceske Budejovice, Czech Republic.
Josef LazarInstitute of Nanobiology and Structural Biology GCRC, Academy of Sciences of the Czech Republic, Zamek 136, Nove Hrady, Czech Republic; Department of Molecular Biology, University of South Bohemia, Branisovska 31, Ceske Budejovice, Czech Republic.
Vincent A PieriboneThe John B. Pierce Laboratory, Inc., New Haven, Connecticut, United States of America; Department of Cellular and Molecular Physiology, Yale University School of Medicine, New Haven, Connecticut, United States of America; Department of Neurobiology, Yale University School of Medicine, New Haven, Connecticut, United States of America.

Funding

Optical Studies of Neuron Activity and OrganizationR01DC005259 · NIDCD · YALE UNIVERSITY · PI COHEN, LAWRENCE B · 2002 to 2019
$5.4M
Scan of Protein Space for Optical Voltage ProbesU24NS057631 · NINDS · YALE UNIVERSITY · PI COHEN, LAWRENCE B · 2007 to 2011
$5.2M
High-Speed, wide field fluorescent imaging of cortex in freely moving animalsR01NS065110 · NINDS · JOHN B. PIERCE LABORATORY, INC. · PI CULURCIELLO, EUGENIO, PIERIBONE, VINCENT A · 2009 to 2015
$3.7M
Genetically-Encoded Voltage Probe DevelopmentR01NS083875 · NINDS · JOHN B. PIERCE LABORATORY, INC. · PI HUGHES, THOMAS E, NITABACH, MICHAEL · 2013 to 2016
$2.3M
Development of Protein-based Voltage ProbesU01NS090565 · NINDS · JOHN B. PIERCE LABORATORY, INC. · PI PIERIBONE, VINCENT A · 2014 to 2016
$1.7M
Optical Studies of Neuron Activity and OrganizationR56DC005259 · NIDCD · YALE UNIVERSITY · PI COHEN, LAWRENCE B · 2007 to 2007
$413k
NIDCD NIH HHS DC005259-43NIDCD NIH HHS R01 DC005259NIDCD NIH HHS R56 DC005259NINDS NIH HHS ARRA-R01NS065110NINDS NIH HHS ARRA U24NS057631-03S1NINDS NIH HHS R01 NS065110NINDS NIH HHS R01 NS083875NINDS NIH HHS R01NS083875NINDS NIH HHS U01 NS090565NINDS NIH HHS U24 NS057631NINDS NIH HHS U24NS057631
6 · The paper itself

Abstract

ArcLight, a genetically encoded fluorescent protein voltage probe with a large ΔF/ΔV, is a fusion between the voltage sensing domain of the Ciona instestinalis voltage sensitive phosphatase and super ecliptic pHluorin carrying a single mutation (A227D in the fluorescent protein). Without this mutation the probe produces only a very small change in fluorescence in response to voltage deflections (∼ 1%). The large signal afforded by this mutation allows optical detection of action potentials and sub-threshold electrical events in single-trials in vitro and in vivo. However, it is unclear how this single mutation produces a probe with such a large modulation of its fluorescence output with changes in membrane potential. In this study, we identified which residues in super ecliptic pHluorin (vs eGFP) are critical for the ArcLight response, as a similarly constructed probe based on eGFP also exhibits large response amplitude if it carries these critical residues. We found that D147 is responsible for determining the pH sensitivity of the fluorescent protein used in these probes but by itself does not result in a voltage probe with a large signal. We also provide evidence that the voltage dependent signal of ArcLight is not simply sensing environmental pH changes. A two-photon polarization microscopy study showed that ArcLight's response to changes in membrane potential includes a reorientation of the super ecliptic pHluorin. We also explored different changes including modification of linker length, deletion of non-essential amino acids in the super ecliptic pHluorin, adding a farnesylation site, using tandem fluorescent proteins and other pH sensitive fluorescent proteins.

Indexed as

Action PotentialsAmino AcidsAnimalsCells, CulturedFluorescenceFluorescent DyesGreen Fluorescent ProteinsHEK293 CellsHumansHydrogen-Ion ConcentrationKineticsLuminescent ProteinsMembrane PotentialsMicroscopy, ConfocalMutation, MissenseNeuronsAmino AcidsArclight fusion proteinFluorescent DyesGreen Fluorescent ProteinsLuminescent ProteinsPHluorinRecombinant Fusion Proteins

Identifiers

PMID25419571
PMCPMC4242678

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.