ReviewGenome biology2014
Genomic analysis of emerging pathogens: methods, application and future trends.
Review in Genome biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
20 citing papers in PubMed, 1 synthesis or guideline pooled it.
- A systematic review of spatial decision support systems in public health informatics supporting the identification of high risk areas for zoonotic disease outbreaks.International journal of health geographics · 2018Pooled it
- Sequence type and strain-level detection ofMicrobial genomics · 2026Article
- Emergence of Usutu virus in Southern Italy: phylogenetic profiling of potential introduction and dissemination routes.Frontiers in veterinary science · 2026Article
- AMRomics: a scalable workflow to analyze large microbial genome collections.BMC genomics · 2024Article
- SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning.Genome biology · 2022Article
- Article
- Contribution of historical herbarium small RNAs to the reconstruction of a cassava mosaic geminivirus evolutionary history.Scientific reports · 2021Article
- First historical genome of a crop bacterial pathogen from herbarium specimen: Insights into citrus canker emergence.PLoS pathogens · 2021Article
- Article
- Whole-genome sequencing as part of national and international surveillance programmes for antimicrobial resistance: a roadmap.BMJ global health · 2020Review
- Global discovery of human-infective RNA viruses: A modelling analysis.PLoS pathogens · 2020Article
- Pathogenic viruses: Molecular detection and characterization.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2020Review
- Emerging Challenges and Opportunities in Infectious Disease Epidemiology.American journal of epidemiology · 2019Review
- Analysis of Evolutionary Processes of Species Jump in Waterfowl Parvovirus.Frontiers in microbiology · 2017Article
- On the importance of skewed offspring distributions and background selection in virus population genetics.Heredity · 2016Review
- The Impact of Selection, Gene Conversion, and Biased Sampling on the Assessment of Microbial Demography.Molecular biology and evolution · 2016Article
- Explaining the geographic spread of emerging epidemics: a framework for comparing viral phylogenies and environmental landscape data.BMC bioinformatics · 2016Article
- Trends in the Mechanistic and Dynamic Modeling of Infectious Diseases.Current epidemiology reports · 2016Review
- SISPA-Seq for rapid whole genome surveys of bacterial isolates.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2015Article
- Tackling Drug Resistant Infection Outbreaks of Global Pandemic Escherichia coli ST131 Using Evolutionary and Epidemiological Genomics.Microorganisms · 2015Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
Abstract
The number of emerging infectious diseases is increasing. Characterizing novel or re-emerging infections is aided by the availability of pathogen genomes. In this review, we evaluate methods that exploit pathogen sequences and the contribution of genomic analysis to understand the epidemiology of recently emerged infectious diseases.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.