Evidence map›Paper›PMID 25418178›Full record

ArticleBiophysical journal2014

The role of solution conditions in the bacteriophage PP7 capsid charge regulation.

Rikkert J Nap, Anže Lošdorfer Božič, Igal Szleifer, Rudolf Podgornik

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
7.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 96 citations in OpenAlex.

  1. Alternating High-Fat and Polysaccharide Diets Modulates Gut Phage-Bacterial Interplay.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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  6. Editorial on the topical issue of charged species in bulk and at interfaces.The European physical journal. E, Soft matter · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 3 countries.

Rikkert J NapDepartment of Biomedical Engineering, Department of Chemistry, and Chemistry of Life Processes Institute, Northwestern University, Evanston, Illinois.
Anže Lošdorfer BožičMax Planck Institute for Biology of Ageing, Cologne, Germany.
Igal SzleiferDepartment of Biomedical Engineering, Department of Chemistry, and Chemistry of Life Processes Institute, Northwestern University, Evanston, Illinois. Electronic address: igalsz@northwestern.edu.
Rudolf PodgornikDepartment of Theoretical Physics, Jožef Stefan Institute, Ljubljana, Slovenia; Department of Physics, Faculty of Mathematics and Physics, University of Ljubljana, Ljubljana, Slovenia; Department of Physics, University of Massachusetts, Amherst, Massachusetts. Electronic address: podgornik@physics.umass.edu.
Northwestern University · USMax Planck Society · DEUniversity of Ljubljana · SI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We investigate and quantify the effects of pH and salt concentration on the charge regulation of the bacteriophage PP7 capsid. These effects are found to be extremely important and substantial, introducing qualitative changes in the charge state of the capsid such as a transition from net-positive to net-negative charge depending on the solution pH. The overall charge of the virus capsid arises as a consequence of a complicated balance with the chemical dissociation equilibrium of the amino acids and the electrostatic interaction between them, and the translational entropy of the mobile solution ions, i.e., counterion release. We show that to properly describe and predict the charging equilibrium of viral capsids in general, one needs to include molecular details as exemplified by the acid-base equilibrium of the detailed distribution of amino acids in the proteinaceous capsid shell.

Indexed as

SalinityStatic ElectricityCapsidHydrogen-Ion ConcentrationLevivirusModels, BiologicalSolutionsSolutions

Identifiers

PMID25418178
PMCPMC4213675
OpenAlexW2124171341

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.