Evidence map›Paper›PMID 25418165›Full record

ArticleBiophysical journal2014

Domain and interdomain energetics underlying gating in Shaker-type Kv channels.

Alexander Peyser, Dirk Gillespie, Roland Roth, Wolfgang Nonner

Abstract read
In one paragraph

Article in Biophysical journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Closed Formula for Transport across Constrictions.Entropy (Basel, Switzerland) · 2023
    Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Alexander PeyserDepartment of Physiology and Biophysics, Miller School of Medicine, University of Miami, Miami, Florida; Computational Biophysics, German Research School for Simulation Sciences, Jülich, Germany; Simulation Lab Neuroscience -- Bernstein Facility Simulation and Database Technology, Institute for Advanced Simulation, Jülich Aachen Research Alliance, Forschungszentrum Jülich, Jülich, Germany. Electronic address: a.peyser@fz-juelich.de.
Dirk GillespieDepartment of Molecular Biophysics and Physiology, Rush University Medical Center, Chicago, Illinois.
Roland RothInstitut für Theoretische Physik, Eberhard Karls Universität Tübingen, Tübingen, Germany.
Wolfgang NonnerDepartment of Physiology and Biophysics, Miller School of Medicine, University of Miami, Miami, Florida.

Funding

Mechanisms of ion channel conduction and blockR01GM083161 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI NONNER, WOLFGANG F · 2008 to 2011
$905k
NIGMS NIH HHS GM083161NIGMS NIH HHS R01 GM083161
6 · The paper itself

Abstract

To understand gating events with a time-base many orders-of-magnitude slower than that of atomic motion in voltage-gated ion channels such as the Shaker-type KV channels, a multiscale physical model is constructed from the experimentally well-characterized voltage-sensor (VS) domains coupled to a hydrophobic gate. The four VS domains are described by a continuum electrostatic model under voltage-clamp conditions, the control of ion flow by the gate domain is described by a vapor-lock mechanism, and the simple coupling principle is informed by known experimental results and trial-and-error. The configurational energy computed for each element is used to produce a total Hamiltonian that is a function of applied voltage, VS positions, and gate radius. We compute statistical-mechanical expectation values of macroscopic laboratory observables. This approach stands in contrast with molecular-dynamic models which are challenged by increasing scale, and kinetic models which assume a probability distribution rather than derive it from the underlying physics. This generic model predicts well the Shaker charge/voltage and conductance/voltage relations; the tight constraints underlying these results allow us to quantitatively assess the underlying physical mechanisms. The total electrical work picked up by the VS domains is an order-of-magnitude larger than the work required to actuate the gate itself, suggesting an energetic basis for the evolutionary flexibility of the voltage-gating mechanism. The cooperative slide-and-interlock behavior of the VS domains described by the VS-gate coupling relation leads to the experimentally observed bistable gating. This engineering approach should prove useful in the investigation of various elements underlying gating characteristics and degraded behavior due to mutation.

Indexed as

Ion Channel GatingAnimalsHumansProtein BindingProtein Structure, TertiaryShaker Superfamily of Potassium ChannelsThermodynamicsShaker Superfamily of Potassium Channels

Identifiers

PMID25418165
PMCPMC4213693

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.