Evidence map›Paper›PMID 25418128›Full record

ArticleThe Journal of biological chemistry2015

Substrate uptake and subcellular compartmentation of anoxic cholesterol catabolism in Sterolibacterium denitrificans.

Ching-Wen Lin, Po-Hsiang Wang, Wael Ismail, Yu-Wen Tsai, Ashraf El Nayal, Chia-Ying Yang, Fu-Chun Yang, Chia-Hsiang Wang, Yin-Ru Chiang

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Universal capability of 3-ketosteroid ΔMicrobial cell factories · 2021
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Ching-Wen LinFrom the Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan and.
Po-Hsiang WangFrom the Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan and.
Wael Ismailthe Life Sciences Department, Biotechnology Program, College of Graduate Studies, Arabian Gulf University, Manama 329, Kingdom of Bahrain.
Yu-Wen TsaiFrom the Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan and.
Ashraf El Nayalthe Life Sciences Department, Biotechnology Program, College of Graduate Studies, Arabian Gulf University, Manama 329, Kingdom of Bahrain.
Chia-Ying YangFrom the Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan and.
Fu-Chun YangFrom the Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan and.
Chia-Hsiang WangFrom the Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan and.
Yin-Ru ChiangFrom the Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan and yinru915@gate.sinica.edu.tw.
Biodiversity Research Center, Academia Sinica · TWArabian Gulf University · BH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cholesterol catabolism by actinobacteria has been extensively studied. In contrast, the uptake and catabolism of cholesterol by Gram-negative species are poorly understood. Here, we investigated microbial cholesterol catabolism at the subcellular level. (13)C metabolomic analysis revealed that anaerobically grown Sterolibacterium denitrificans, a β-proteobacterium, adopts an oxygenase-independent pathway to degrade cholesterol. S. denitrificans cells did not produce biosurfactants upon growth on cholesterol and exhibited high cell surface hydrophobicity. Moreover, S. denitrificans did not produce extracellular catabolic enzymes to transform cholesterol. Accordingly, S. denitrificans accessed cholesterol by direction adhesion. Cholesterol is imported through the outer membrane via a putative FadL-like transport system, which is induced by neutral sterols. The outer membrane steroid transporter is able to selectively import various C27 sterols into the periplasm. S. denitrificans spheroplasts exhibited a significantly higher efficiency in cholest-4-en-3-one-26-oic acid uptake than in cholesterol uptake. We separated S. denitrificans proteins into four fractions, namely the outer membrane, periplasm, inner membrane, and cytoplasm, and we observed the individual catabolic reactions within them. Our data indicated that, in the periplasm, various periplasmic and peripheral membrane enzymes transform cholesterol into cholest-4-en-3-one-26-oic acid. The C27 acidic steroid is then transported into the cytoplasm, in which side-chain degradation and the subsequent sterane cleavage occur. This study sheds light into microbial cholesterol metabolism under anoxic conditions.

Indexed as

Cell HypoxiaAnaerobiosisCarbon RadioisotopesCholestenonesCholesterolGram-Negative BacteriaLipolysisMetabolismOxidation-ReductionPeriplasmRhodocyclaceaeSterolsSubstrate SpecificityCarbon Radioisotopescholest-4-en-3-oneCholestenonesCholesterolSterolsBacterial MetabolismCholesterolCholesterol MetabolismGram-negative BacteriaMetabolomicsSteroid HormoneSubcellular Fractionation

Identifiers

PMID25418128
PMCPMC4294482
OpenAlexW2033453094

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.