Evidence map›Paper›PMID 25417751›Full record

ArticleScientific reports2014

Coordinating expression of RNA binding proteins with their mRNA targets.

Huifeng Jiang, Lin Xu, Zhe Wang, Jack Keene, Zhenglong Gu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. RNA-binding proteins as versatile metabolic regulators.npj metabolic health and disease · 2025
    Article
  3. Article
  4. Article
  5. Article
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  7. Embryonic lethal abnormal vision proteins and adenine and uridine-rich element mRNAs after global cerebral ischemia and reperfusion in the rat.Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism · 2017
    Article
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  9. Article
  10. Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Huifeng Jiang1] Key Laboratory of Systems Microbial Biotechnology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China [2] Division of Nutritional Sciences, Cornell University, Ithaca, New York 14853, USA.
Lin XuDivision of Nutritional Sciences, Cornell University, Ithaca, New York 14853, USA.
Zhe WangDivision of Nutritional Sciences, Cornell University, Ithaca, New York 14853, USA.
Jack KeeneDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC 27701, USA.
Zhenglong GuDivision of Nutritional Sciences, Cornell University, Ithaca, New York 14853, USA.
Cornell University · USChinese Academy of Sciences · CNDuke Medical Center · US

Funding

RNA Dynamics of Transient Macromolecular Complexes in Cancer CellsR01CA157268 · NCI · DUKE UNIVERSITY · PI KEENE, JACK D · 2011 to 2015
$1.7M
Genetic and Evolutionary Basis of Fungal Drug ResistanceR01AI085286 · NIAID · CORNELL UNIVERSITY · PI GU, ZHENGLONG · 2010 to 2014
$1.7M
NCI NIH HHS R01 CA157268NIAID NIH HHS 1R01AI085286NIAID NIH HHS R01 AI085286
6 · The paper itself

Abstract

Post-transcriptional regulation by RNA binding proteins (RBPs) plays prominent roles in a variety of biological processes. In this study, by analyzing the global regulatory relationship between RBPs and their target mRNAs in yeast, we discovered that most RBP genes are co-regulated with their target genes, but the RBPs tend to dampen expression variation among their target mRNAs. We further examined a well-studied RBP gene, PUF3, and found that the protein decreases the variation of its target mRNAs by differentially affecting their decay. We also constructed a mathematical model to explain the relationship between RBPs and the expression of their target genes. Our results provided new insights into the functional importance of RBPs in coordinating the expression of their target genes.

Indexed as

Gene Expression RegulationModels, TheoreticalProtein BindingRNA-Binding ProteinsRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsPUF3 protein, S cerevisiaeRNA-Binding ProteinsRNA, MessengerSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID25417751
PMCPMC4241525
OpenAlexW2023061112

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.