Evidence map›Paper›PMID 25417158›Full record

ArticleCell2014

Spatial map of human T cell compartmentalization and maintenance over decades of life.

Joseph J C Thome, Naomi Yudanin, Yoshiaki Ohmura, Masaru Kubota, Boris Grinshpun, Taheri Sathaliyawala, Tomoaki Kato, Harvey Lerner, Yufeng Shen, Donna L Farber

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 400 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
400citing papers in PubMed, 1 pooled it
13.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

400 citing papers in PubMed, 1 synthesis or guideline pooled it, 566 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Review
  4. CD39 on CD8European journal of immunology · 2026
    Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Immune development in early life.Nature immunology · 2026
    Review
  14. Article
  15. Article
  16. Increased Numbers of CD4Annals of neurology · 2026
    Article
  17. Review
  18. Article
  19. Review
  20. Article

340 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Joseph J C ThomeColumbia Center for Translational Immunology, Columbia University Medical Center, New York, NY 10032, USA; Department of Microbiology and Immunology, Columbia University Medical Center, New York, NY 10032, USA.
Naomi YudaninColumbia Center for Translational Immunology, Columbia University Medical Center, New York, NY 10032, USA; Department of Microbiology and Immunology, Columbia University Medical Center, New York, NY 10032, USA.
Yoshiaki OhmuraDepartment of Surgery, Columbia University Medical Center, New York, NY 10032, USA.
Masaru KubotaDepartment of Surgery, Columbia University Medical Center, New York, NY 10032, USA.
Boris GrinshpunDepartment of Systems Biology and Biomedical Informatics, and the JP Sulzberger Columbia Genome Center, Columbia University, New York, NY 10032, USA.
Taheri SathaliyawalaColumbia Center for Translational Immunology, Columbia University Medical Center, New York, NY 10032, USA.
Tomoaki KatoDepartment of Surgery, Columbia University Medical Center, New York, NY 10032, USA.
Harvey LernerThe New York Organ Donor Network (NYODN), New York, NY 10001, USA.
Yufeng ShenDepartment of Systems Biology and Biomedical Informatics, and the JP Sulzberger Columbia Genome Center, Columbia University, New York, NY 10032, USA.
Donna L FarberColumbia Center for Translational Immunology, Columbia University Medical Center, New York, NY 10032, USA; Department of Surgery, Columbia University Medical Center, New York, NY 10032, USA; Department of Microbiology and Immunology, Columbia University Medical Center, New York, NY 10032, USA. Electronic address: df2396@cumc.columbia.edu.
Columbia University Irving Medical Center · USColumbia University · USDonor Network West · US

Funding

Transcriptomics and Repertoire ProfilingP01AI106697 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Donna L. Farber · 2013 to 2026
$31.3M
Mucosal Memory T Cells at the Vanguard of Human Host DefenseRC1AI086164 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI FARBER, DONNA L. · 2010 to 2010
$498k
Becton Dickinson LSR II Analytical Flow CytometerS10RR027050 · NCRR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CLYNES, RAPHAEL A. · 2011 to 2011
$413k
Longevity and turnover of human naive T cells in lymphoid tissueF31AG047003 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI THOME, JOSEPH JOHN-CHARLES · 2013 to 2015
$109k
NCRR NIH HHS S10 RR027050NIAID NIH HHS P01AI06697NIAID NIH HHS P01 AI106697NIAID NIH HHS RC1 AI086164NIA NIH HHS F31 AG047003NIA NIH HHS F31AG047003
6 · The paper itself

Abstract

Mechanisms for human memory T cell differentiation and maintenance have largely been inferred from studies of peripheral blood, though the majority of T cells are found in lymphoid and mucosal sites. We present here a multidimensional, quantitative analysis of human T cell compartmentalization and maintenance over six decades of life in blood, lymphoid, and mucosal tissues obtained from 56 individual organ donors. Our results reveal that the distribution and tissue residence of naive, central, and effector memory, and terminal effector subsets is contingent on both their differentiation state and tissue localization. Moreover, T cell homeostasis driven by cytokine or TCR-mediated signals is different in CD4+ or CD8+ T cell lineages, varies with their differentiation stage and tissue localization, and cannot be inferred from blood. Our data provide an unprecedented spatial and temporal map of human T cell compartmentalization and maintenance, supporting distinct pathways for human T cell fate determination and homeostasis.

Indexed as

AdolescentAdultAgedAgingCD28 AntigensCell DifferentiationChildChild, PreschoolHumansInterleukin-7 Receptor alpha SubunitLymphoid TissueMiddle AgedMucous MembraneReceptors, Antigen, T-CellTissue DonorsT-LymphocytesCD28 AntigensInterleukin-7 Receptor alpha SubunitReceptors, Antigen, T-Cell

Identifiers

PMID25417158
PMCPMC4243051
OpenAlexW2006192795

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.