Evidence map›Paper›PMID 25417157›Full record

ArticleCell2014

Sequencing the mouse Y chromosome reveals convergent gene acquisition and amplification on both sex chromosomes.

Y Q Shirleen Soh, Jessica Alföldi, Tatyana Pyntikova, Laura G Brown, Tina Graves, Patrick J Minx, Robert S Fulton, Colin Kremitzki, Natalia Koutseva, Jacob L Mueller and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 209 papers.

0numbers the graph read from it
0cells of the map it votes in
209citing papers in PubMed
19.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

209 citing papers in PubMed, 351 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

149 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 1 country.

Y Q Shirleen SohWhitehead Institute, 9 Cambridge Center, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA.
Jessica AlföldiWhitehead Institute, 9 Cambridge Center, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA.
Tatyana PyntikovaWhitehead Institute, 9 Cambridge Center, Cambridge, MA 02142, USA.
Laura G BrownWhitehead Institute, 9 Cambridge Center, Cambridge, MA 02142, USA; Howard Hughes Medical Institute, Whitehead Institute, Cambridge, MA 02142, USA.
Tina GravesThe Genome Institute, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA.
Patrick J MinxThe Genome Institute, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA.
Robert S FultonThe Genome Institute, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA.
Colin KremitzkiThe Genome Institute, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA.
Natalia KoutsevaWhitehead Institute, 9 Cambridge Center, Cambridge, MA 02142, USA.
Jacob L MuellerWhitehead Institute, 9 Cambridge Center, Cambridge, MA 02142, USA.
Steve RozenWhitehead Institute, 9 Cambridge Center, Cambridge, MA 02142, USA.
Jennifer F HughesWhitehead Institute, 9 Cambridge Center, Cambridge, MA 02142, USA.
Elaine OwensCollege of Veterinary Medicine and Biomedical Sciences, 4458 Texas A&M University, College Station, TX 77843, USA.
James E WomackCollege of Veterinary Medicine and Biomedical Sciences, 4458 Texas A&M University, College Station, TX 77843, USA.
William J MurphyCollege of Veterinary Medicine and Biomedical Sciences, 4458 Texas A&M University, College Station, TX 77843, USA.
Qing CaoBACPAC Resources, Children's Hospital Oakland, 747 52nd Street, Oakland, CA 94609, USA.
Pieter de JongBACPAC Resources, Children's Hospital Oakland, 747 52nd Street, Oakland, CA 94609, USA.
Wesley C WarrenThe Genome Institute, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA.
Richard K WilsonThe Genome Institute, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA.
Helen SkaletskyWhitehead Institute, 9 Cambridge Center, Cambridge, MA 02142, USA; Howard Hughes Medical Institute, Whitehead Institute, Cambridge, MA 02142, USA.
David C PageWhitehead Institute, 9 Cambridge Center, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA; Howard Hughes Medical Institute, Whitehead Institute, Cambridge, MA 02142, USA. Electronic address: dcpage@wi.mit.edu.
Whitehead Institute for Biomedical Research · USWashington University in St. Louis · USTexas A&M University · USHoward Hughes Medical Institute · USMassachusetts Institute of Technology · US

Funding

MAPPING THE HUMAN Y CHROMOSOMER01HG000257 · NHGRI · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI PAGE, DAVID C. · 1991 to 2013
$15.3M
X Chromosomal Studies of Spermatogenic FailureR00HD064753 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MUELLER, JACOB L · 2014 to 2016
$670k
Howard Hughes Medical InstituteNHGRI NIH HHS R01 HG000257NICHD NIH HHS R00 HD064753
6 · The paper itself

Abstract

We sequenced the MSY (male-specific region of the Y chromosome) of the C57BL/6J strain of the laboratory mouse Mus musculus. In contrast to theories that Y chromosomes are heterochromatic and gene poor, the mouse MSY is 99.9% euchromatic and contains about 700 protein-coding genes. Only 2% of the MSY derives from the ancestral autosomes that gave rise to the mammalian sex chromosomes. Instead, all but 45 of the MSY's genes belong to three acquired, massively amplified gene families that have no homologs on primate MSYs but do have acquired, amplified homologs on the mouse X chromosome. The complete mouse MSY sequence brings to light dramatic forces in sex chromosome evolution: lineage-specific convergent acquisition and amplification of X-Y gene families, possibly fueled by antagonism between acquired X-Y homologs. The mouse MSY sequence presents opportunities for experimental studies of a sex-specific chromosome in its entirety, in a genetically tractable model organism.

Indexed as

Biological EvolutionChromosomes, MammalianSequence Analysis, DNAY ChromosomeAnimalsCentromereChromosomes, Artificial, BacterialFemaleHumansMaleMice, Inbred C57BLPhylogenyPrimatesX Chromosome

Identifiers

PMID25417157
PMCPMC4260969
OpenAlexW2102283657

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.