Evidence map›Paper›PMID 25416759›Full record

ArticleApplied and environmental microbiology2015

The Geoglobus acetivorans genome: Fe(III) reduction, acetate utilization, autotrophic growth, and degradation of aromatic compounds in a hyperthermophilic archaeon.

Andrey V Mardanov, Galina B Slododkina, Alexander I Slobodkin, Alexey V Beletsky, Sergey N Gavrilov, Ilya V Kublanov, Elizaveta A Bonch-Osmolovskaya, Konstantin G Skryabin, Nikolai V Ravin

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.2field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 42 citations in OpenAlex.

  1. Draft genome sequence ofMicrobiology resource announcements · 2026
    Article
  2. The extreme halophilic archaeonJournal of bacteriology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Microorganisms from deep-sea hydrothermal vents.Marine life science & technology · 2021
    Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Genomic Insights Into Energy Metabolism ofFrontiers in microbiology · 2018
    Article
  18. Article
  19. Article
  20. The draft genome of the hyperthermophilic archaeonStandards in genomic sciences · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Andrey V MardanovBioengineering Centre, Russian Academy of Sciences, Moscow, Russia.
Galina B SlododkinaWinogradsky Institute of Microbiology, Russian Academy of Sciences, Moscow, Russia.
Alexander I SlobodkinWinogradsky Institute of Microbiology, Russian Academy of Sciences, Moscow, Russia.
Alexey V BeletskyBioengineering Centre, Russian Academy of Sciences, Moscow, Russia.
Sergey N GavrilovWinogradsky Institute of Microbiology, Russian Academy of Sciences, Moscow, Russia.
Ilya V KublanovWinogradsky Institute of Microbiology, Russian Academy of Sciences, Moscow, Russia.
Elizaveta A Bonch-OsmolovskayaWinogradsky Institute of Microbiology, Russian Academy of Sciences, Moscow, Russia.
Konstantin G SkryabinBioengineering Centre, Russian Academy of Sciences, Moscow, Russia.
Nikolai V RavinBioengineering Centre, Russian Academy of Sciences, Moscow, Russia nravin@mail.ru.
Russian Academy of Sciences · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Geoglobus acetivorans is a hyperthermophilic anaerobic euryarchaeon of the order Archaeoglobales isolated from deep-sea hydrothermal vents. A unique physiological feature of the members of the genus Geoglobus is their obligate dependence on Fe(III) reduction, which plays an important role in the geochemistry of hydrothermal systems. The features of this organism and its complete 1,860,815-bp genome sequence are described in this report. Genome analysis revealed pathways enabling oxidation of molecular hydrogen, proteinaceous substrates, fatty acids, aromatic compounds, n-alkanes, and organic acids, including acetate, through anaerobic respiration linked to Fe(III) reduction. Consistent with the inability of G. acetivorans to grow on carbohydrates, the modified Embden-Meyerhof pathway encoded by the genome is incomplete. Autotrophic CO2 fixation is enabled by the Wood-Ljungdahl pathway. Reduction of insoluble poorly crystalline Fe(III) oxide depends on the transfer of electrons from the quinone pool to multiheme c-type cytochromes exposed on the cell surface. Direct contact of the cells and Fe(III) oxide particles could be facilitated by pilus-like appendages. Genome analysis indicated the presence of metabolic pathways for anaerobic degradation of aromatic compounds and n-alkanes, although an ability of G. acetivorans to grow on these substrates was not observed in laboratory experiments. Overall, our results suggest that Geoglobus species could play an important role in microbial communities of deep-sea hydrothermal vents as lithoautotrophic producers. An additional role as decomposers would close the biogeochemical cycle of carbon through complete mineralization of various organic compounds via Fe(III) respiration.

Indexed as

Autotrophic ProcessesGenome, ArchaealMetabolic Networks and PathwaysAcetatesArchaeoglobalesBiotransformationDNA, ArchaealFerrous CompoundsMolecular Sequence DataOxidation-ReductionPolycyclic Aromatic HydrocarbonsSequence Analysis, DNAAcetatesDNA, ArchaealFerrous CompoundsPolycyclic Aromatic Hydrocarbons

Identifiers

PMID25416759
PMCPMC4292469
OpenAlexW2041686572

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.