Evidence map›Paper›PMID 25416705›Full record

ArticleG3 (Bethesda, Md.)2014

Functional variants in DPYSL2 sequence increase risk of schizophrenia and suggest a link to mTOR signaling.

Yaping Liu, Xuan Pham, Lilei Zhang, Pei-Lung Chen, Grzegorz Burzynski, David M McGaughey, Shan He, John A McGrath, Paula Wolyniec, Margaret D Fallin and 5 more

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Cellular Models in Schizophrenia Research.International journal of molecular sciences · 2021
    Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. International journal of molecular sciences · 2019
    Review
  14. mTOR-Related Brain Dysfunctions in Neuropsychiatric Disorders.International journal of molecular sciences · 2018
    Review
  15. Recent Advances in the Genetics of Schizophrenia.Molecular neuropsychiatry · 2018
    Review
  16. Review
  17. Article
  18. The DPYSL2 gene connects mTOR and schizophrenia.Translational psychiatry · 2016
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 1 institution in 1 country.

Yaping LiuMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine and, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205 Predoctoral Training Program in Human Genetics, Johns Hopkins University School of Medicine and, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205.
Xuan PhamMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine and, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205 Predoctoral Training Program in Human Genetics, Johns Hopkins University School of Medicine and, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205.
Lilei ZhangMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine and, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205.
Pei-Lung ChenMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine and, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205 Predoctoral Training Program in Human Genetics, Johns Hopkins University School of Medicine and, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205.
Grzegorz BurzynskiMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine and, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205.
David M McGaugheyMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine and, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205 Predoctoral Training Program in Human Genetics, Johns Hopkins University School of Medicine and, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205.
Shan HeDepartment of Molecular Biology and Genetics, Johns Hopkins University School of Medicine and, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205.
John A McGrathDepartment of Psychiatry, Johns Hopkins University School of Medicine and, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205.
Paula WolyniecDepartment of Psychiatry, Johns Hopkins University School of Medicine and, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205.
Margaret D FallinDepartment of Epidemiology, Johns Hopkins University School of Medicine and, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205.
Megan S PierceMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine and, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205 Predoctoral Training Program in Human Genetics, Johns Hopkins University School of Medicine and, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205.
Andrew S McCallionMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine and, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205 Department of Molecular and Comparative Pathobiology, Johns Hopkins University School of Medicine and, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205.
Ann E PulverDepartment of Psychiatry, Johns Hopkins University School of Medicine and, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205.
Dimitrios AvramopoulosMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine and, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205.
David VallePredoctoral Training Program in Human Genetics, Johns Hopkins University School of Medicine and, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205 dvalle@jhmi.edu.
Johns Hopkins University · US

Funding

Project 3P50MH094268 · NIMH · JOHNS HOPKINS UNIVERSITY · PI SAWA, AKIRA · 2011 to 2020
$19.9M
Predoctoral Training Program in Human GeneticsT32GM007814 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 1985 to 2021
$10.6M
Development of a Neuronal Regulatory LexiconR01NS062972 · NINDS · JOHNS HOPKINS UNIVERSITY · PI MCCALLION, ANDREW S · 2009 to 2018
$4.1M
Identification of genetic determinants of schizophrenia related phenotypesR01MH085018 · NIMH · JOHNS HOPKINS UNIVERSITY · PI AVRAMOPOULOS, DIMITRIOS · 2010 to 2013
$2.5M
NIGMS NIH HHS T32 GM007814NIMH NIH HHS P50 MH094268NIMH NIH HHS P50MH094268NIMH NIH HHS R01 MH085018NIMH NIH HHS R01MH085018NINDS NIH HHS R01 NS062972NINDS NIH HHS R01 NS062972-01
6 · The paper itself

Abstract

Numerous linkage and association studies by our group and others have implicated DPYSL2 at 8p21.2 in schizophrenia. Here we explore DPYSL2 for functional variation that underlies these associations. We sequenced all 14 exons of DPYSL2 as well as 27 conserved noncoding regions at the locus in 137 cases and 151 controls. We identified 120 variants, eight of which we genotyped in an additional 729 cases and 1542 controls. Several were significantly associated with schizophrenia, including a three single-nucleotide polymorphism (SNP) haplotype in the proximal promoter, two SNPs in intron 1, and a polymorphic dinucleotide repeat in the 5'-untranslated region that alters sequences predicted to be involved in translational regulation by mammalian target of rapamycin signaling. The 3-SNP promoter haplotype and the sequence surrounding one of the intron 1 SNPs direct tissue-specific expression in the nervous systems of Zebrafish in a pattern consistent with the two endogenous dpysl2 paralogs. In addition, two SNP haplotypes over the coding exons and 3' end of DPYSL2 showed association with opposing sex-specific risks. These data suggest that these polymorphic, schizophrenia-associated sequences function as regulatory elements for DPYSL2 expression. In transient transfection assays, the high risk allele of the polymorphic dinucleotide repeat diminished reporter expression by 3- to 4-fold. Both the high- and low-risk alleles respond to allosteric mTOR inhibition by rapamycin until, at high drug levels, allelic differences are eliminated. Our results suggest that reduced transcription and mTOR-regulated translation of certain DPYSL2 isoforms increase the risk for schizophrenia.

Indexed as

AdultAgedAged, 80 and overAnimalsCells, CulturedCerebral CortexExonsFemaleHaplotypesHEK293 CellsHumansIntercellular Signaling Peptides and ProteinsMaleMiceMiddle AgedNerve Tissue Proteinscollapsin response mediator protein-2Intercellular Signaling Peptides and ProteinsMTOR protein, humanNerve Tissue ProteinsTOR Serine-Threonine Kinasesbrain developmentCRMP2gene regulationmTORRNA translation

Identifiers

PMID25416705
PMCPMC4291470
OpenAlexW2125625086

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.