Evidence map›Paper›PMID 25416365›Full record

ArticleMethods in enzymology2014

Imaging changes in the cytosolic ATP-to-ADP ratio.

Mathew Tantama, Gary Yellen

Abstract read
In one paragraph

Article in Methods in enzymology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
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  7. Review
  8. Exposure to Trichloroethylene MetaboliteChemical research in toxicology · 2020
    Article
  9. Article
  10. Article
  11. Article
  12. Fast bioelectrical switches.Nature chemical biology · 2019
    Article
  13. Article
  14. Minimizing ATP depletion by oxygen scavengers for single-molecule fluorescence imaging in live cells.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Imaging Adenosine Triphosphate (ATP).The Biological bulletin · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Mathew TantamaDepartment of Chemistry, Purdue University, West Lafayette, Indiana, USA.
Gary YellenDepartment of Neurobiology, Harvard Medical School, Boston, Massachusetts, USA. Electronic address: gary_yellen@hms.harvard.edu.
Harvard University · USPurdue University West Lafayette · US

Funding

Single cell analysis of metabolism using genetically-encoded fluorescent sensorsDP1EB016985 · NIBIB · HARVARD MEDICAL SCHOOL · PI YELLEN, GARY I · 2012 to 2016
$4.2M
Compartmentation of Neuronal ATP and Metabolic Regulation of ExcitabilityF32NS066613 · NINDS · HARVARD MEDICAL SCHOOL · PI TANTAMA, MATHEW · 2011 to 2013
$160k
NIBIB NIH HHS DP1 EB016985NINDS NIH HHS F32 NS066613
6 · The paper itself

Abstract

Adenosine triphosphate (ATP) is a central metabolite that plays fundamental roles as an energy transfer molecule, a phosphate donor, and a signaling molecule inside the cells. The phosphoryl group transfer potential of ATP provides a thermodynamic driving force for many metabolic reactions, and phosphorylation of both small metabolites and large proteins can serve as a regulatory modification. In the process of phosphoryl transfer from ATP, the diphosphate ADP is produced, and as a result, the ATP-to-ADP ratio is an important physiological control parameter. The ATP-to-ADP ratio is directly proportional to cellular energy charge and phosphorylation potential. Furthermore, several ATP-dependent enzymes and signaling proteins are regulated by ADP, and their activation profiles are a function of the ATP-to-ADP ratio. Finally, regeneration of ATP from ADP can serve as an important readout of energy metabolism and mitochondrial function. We, therefore, developed a genetically encoded fluorescent biosensor tuned to sense ATP-to-ADP ratios in the physiological range of healthy mammalian cells. Here, we present a protocol for using this biosensor to visualize energy status using live-cell fluorescence microscopy.

Indexed as

Biosensing TechniquesAdenosine DiphosphateAdenosine TriphosphateAnimalsBrainCalibrationCells, CulturedCytosolEnergy MetabolismHEK293 CellsHumansImage Processing, Computer-AssistedMiceMicroscopy, FluorescenceAdenosine DiphosphateAdenosine TriphosphateADPATPEnergyFluorescenceGenetically encodedImagingMetabolismMicroscopyRatiometricSensor

Identifiers

PMID25416365
PMCPMC4323350
OpenAlexW2297906743

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.