Evidence map›Paper›PMID 25416238›Full record

ArticleEukaryotic cell2015

Ctk1 function is necessary for full translation initiation activity in Saccharomyces cerevisiae.

Britta Coordes, Katharina M Brünger, Kaspar Burger, Boumediene Soufi, Juliane Horenk, Dirk Eick, Jesper V Olsen, Katja Sträßer

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Review
  3. Cyclin-dependent kinases: Masters of the eukaryotic universe.Wiley interdisciplinary reviews. RNA · 2023
    Review
  4. Review
  5. International journal of molecular sciences · 2023
    Article
  6. Structure and activation mechanism of the yeast RNA Pol II CTD kinase CTDK-1 complex.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  7. Lithium Chloride Sensitivity in Yeast and Regulation of Translation.International journal of molecular sciences · 2020
    Article
  8. Review
  9. Article
  10. Article
  11. Multiple roles of CTDK-I throughout the cell.Cellular and molecular life sciences : CMLS · 2019
    Review
  12. Article
  13. Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Britta CoordesGene Center and Department of Biochemistry, Ludwig Maximilians University of Munich, Munich, Germany Center for Integrated Protein Science Munich (CIPSM), Munich, Germany.
Katharina M BrüngerGene Center and Department of Biochemistry, Ludwig Maximilians University of Munich, Munich, Germany Center for Integrated Protein Science Munich (CIPSM), Munich, Germany.
Kaspar BurgerCenter for Integrated Protein Science Munich (CIPSM), Munich, Germany Department of Molecular Epigenetics, Helmholtz Center Munich, Munich, Germany.
Boumediene SoufiProteomics and Signal Transduction, Max-Planck-Institute of Biochemistry, Martinsried, Germany NNF Center for Protein Research, Department for Proteomics, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark.
Juliane HorenkGene Center and Department of Biochemistry, Ludwig Maximilians University of Munich, Munich, Germany Center for Integrated Protein Science Munich (CIPSM), Munich, Germany.
Dirk EickCenter for Integrated Protein Science Munich (CIPSM), Munich, Germany Department of Molecular Epigenetics, Helmholtz Center Munich, Munich, Germany.
Jesper V OlsenProteomics and Signal Transduction, Max-Planck-Institute of Biochemistry, Martinsried, Germany NNF Center for Protein Research, Department for Proteomics, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark.
Katja SträßerGene Center and Department of Biochemistry, Ludwig Maximilians University of Munich, Munich, Germany Center for Integrated Protein Science Munich (CIPSM), Munich, Germany Institute of Biochemistry, Justus Liebig University Gießen, Gießen, Germany katja.straesser@chemie.bio.uni-giessen.de.
Center for Integrated Protein Science Munich · DEMax Planck Institute of Biochemistry · DELudwig-Maximilians-Universität München · DEUniversity of Giessen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Translation is a fundamental and highly regulated cellular process. Previously, we reported that the kinase and transcription elongation factor Ctk1 increases fidelity during translation elongation in Saccharomyces cerevisiae. Here, we show that loss of Ctk1 function also affects the initiation step of translation. Translation active extracts from Ctk1-depleted cells show impaired translation activity of capped mRNA, but not mRNA reporters containing the cricket paralysis virus (CrPV) internal ribosome entry site (IRES). Furthermore, the formation of 80S initiation complexes is decreased, which is probably due to reduced subunit joining. In addition, we determined the changes in the phosphorylation pattern of a ribosome enriched fraction after depletion of Ctk1. Thus, we provide a catalogue of phosphoproteomic changes dependent on Ctk1. Taken together, our data suggest a stimulatory function of Ctk1 in 80S formation during translation initiation.

Indexed as

Peptide Chain Initiation, TranslationalProtein KinasesRibosome SubunitsRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCTDK-I protein complex, S cerevisiaeProtein KinasesRNA, MessengerSaccharomyces cerevisiae Proteins

Identifiers

PMID25416238
PMCPMC4279022
OpenAlexW2132399068

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.