Evidence map›Paper›PMID 25414259›Full record

ArticleThe Journal of biological chemistry2015

MicroRNA-340-mediated degradation of microphthalmia-associated transcription factor (MITF) mRNA is inhibited by coding region determinant-binding protein (CRD-BP).

Srikanta Goswami, Rohinton S Tarapore, Ashley M Poenitzsch Strong, Jessica J TeSlaa, Yevgenya Grinblat, Vijayasaradhi Setaluri, Vladimir S Spiegelman

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 57 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. A New Approach to Melanoma Treatment: microRNAs.Current topics in medicinal chemistry · 2024
    Review
  6. Article
  7. Role of miRNA in Melanoma Development and Progression.International journal of molecular sciences · 2022
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. microRNAs in the Regulation of Melanogenesis.International journal of molecular sciences · 2021
    Review
  13. Review
  14. IGF2BP1, a Conserved Regulator of RNA Turnover in Cancer.Frontiers in molecular biosciences · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. The miRNAs Role in Melanoma and in Its Resistance to Therapy.International journal of molecular sciences · 2020
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Srikanta GoswamiFrom the Department of Dermatology and Paul P. Carbone Comprehensive Cancer Center.
Rohinton S TaraporeFrom the Department of Dermatology and Paul P. Carbone Comprehensive Cancer Center, the Molecular and Environmental Toxicology Center, and.
Ashley M Poenitzsch StrongFrom the Department of Dermatology and Paul P. Carbone Comprehensive Cancer Center, the Molecular and Environmental Toxicology Center, and.
Jessica J TeSlaathe Departments of Zoology and Anatomy, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin 53706.
Yevgenya Grinblatthe Molecular and Environmental Toxicology Center, and the Departments of Zoology and Anatomy, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin 53706.
Vijayasaradhi SetaluriFrom the Department of Dermatology and Paul P. Carbone Comprehensive Cancer Center.
Vladimir S SpiegelmanFrom the Department of Dermatology and Paul P. Carbone Comprehensive Cancer Center, the Molecular and Environmental Toxicology Center, and spiegelman@dermatology.wisc.edu.
University of Wisconsin Carbone Cancer Center · USUniversity of Wisconsin–Madison · US

Funding

Molecular & Environmental Toxicology Pre-& Postdoctoral Training ProgramT32ES007015 · NIEHS · UNIVERSITY OF WISCONSIN-MADISON · PI CHRISTOPHER A BRADFIELD · 1985 to 2026
$11.5M
RNA-binding protein CRD-BP in melanocyte biologyR01AR063361 · NIAMS · UNIVERSITY OF WISCONSIN-MADISON · PI SPIEGELMAN, VLADIMIR S. · 2013 to 2017
$1.6M
Role for zic genes in the developing midbrain.R01GM076244 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI GRINBLAT, YEVGENYA · 2006 to 2010
$1.4M
The Role of CRD-BP-regulated mRNA Stability in Colorectal CancersR01CA121851 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI SPIEGELMAN, VLADIMIR S. · 2007 to 2011
$1.4M
CRD-BP-mediated regulation of Wnt signaling in intestinal tumorigenesisR21CA191550 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI SPIEGELMAN, VLADIMIR S. · 2015 to 2016
$364k
NCI NIH HHS CA121851NCI NIH HHS CA12509NCI NIH HHS CA191550NCI NIH HHS R01 CA121851NCI NIH HHS R21 CA191550NIAMS NIH HHS AR063361NIAMS NIH HHS R01 AR063361NIEHS NIH HHS T32 ES007015NIGMS NIH HHS GM076244NIGMS NIH HHS R01 GM076244
6 · The paper itself

Abstract

Alternative cleavage and polyadenylation generates multiple transcript variants producing mRNA isoforms with different length 3'-UTRs. Alternative cleavage and polyadenylation enables differential post-transcriptional regulation via the availability of different cis-acting elements in 3'-UTRs. Microphthalmia-associated transcription factor (MITF) is a master regulator of melanocyte development and melanogenesis. This central transcription factor is also implicated in melanoma development. Here, we show that melanoma cells favor the expression of MITF mRNA with a shorter 3'-UTR. We also establish that this isoform is regulated by a micro RNA (miRNA/miR), miR-340. miR-340 interacts with two of its target sites on the MITF 3'-UTR, causing mRNA degradation as well as decreased expression and activity of MITF. Conversely, the RNA-binding protein, coding region determinant-binding protein, was shown to be highly expressed in melanoma, directly binds to the 3'-UTR of MITF mRNA, and prevents the binding of miR-340 to its target sites, resulting in the stabilization of MITF transcripts, elevated expression, and transcriptional activity of MITF. This regulatory interplay between RNA-binding protein and miRNA highlights an important mechanism for the regulation of MITF in melanocytes and malignant melanomas.

Indexed as

3' Untranslated RegionsGene Expression Regulation, NeoplasticBase SequenceCell Line, TumorCell ProliferationCell SurvivalHEK293 CellsHumansMelanocytesMicrophthalmia-Associated Transcription FactorMicroRNAsMolecular Sequence DataProtein IsoformsRNA-Binding ProteinsRNA StabilitySignal Transduction3' Untranslated RegionsIGF2BP1 protein, humanMicrophthalmia-Associated Transcription FactorMicroRNAsMIRN340 microRNA, humanMITF protein, humanProtein IsoformsRNA-Binding ProteinsAlternative Cleavage and PolyadenylationCRD-BPIGF2BP1MelanogenesisMelanomaMicroRNA (miRNA)miRNAMITFmRNAmRNA DecayRibonuclear Protein (RNP)

Identifiers

PMID25414259
PMCPMC4281741
OpenAlexW2099149032

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.