Evidence map›Paper›PMID 25413302›Full record

ArticleGenome biology2014

The genome of the sparganosis tapeworm Spirometra erinaceieuropaei isolated from the biopsy of a migrating brain lesion.

Hayley M Bennett, Hoi Ping Mok, Effrossyni Gkrania-Klotsas, Isheng J Tsai, Eleanor J Stanley, Nagui M Antoun, Avril Coghlan, Bhavana Harsha, Alessandra Traini, Diogo M Ribeiro and 10 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
5.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
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  6. Lactate Dehydrogenase Gene Family inAnimals : an open access journal from MDPI · 2023
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  8. Article
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  10. Article
  11. Epidemiology, Diagnosis, and Prevention of Sparganosis in Asia.Animals : an open access journal from MDPI · 2022
    Review
  12. Cestodes in the genomic era.Parasitology research · 2022
    Review
  13. Article
  14. Article
  15. Article
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 7 institutions in 2 countries.

Hayley M Bennett
Hoi Ping Mok
Effrossyni Gkrania-Klotsas
Isheng J Tsai
Eleanor J Stanley
Nagui M Antoun
Avril Coghlan
Bhavana Harsha
Alessandra Traini
Diogo M Ribeiro
Sascha Steinbiss
Sebastian B Lucas
Kieren S J Allinson
Stephen J Price
Thomas S Santarius
Andrew J Carmichael
Peter L Chiodini
Nancy Holroyd
Andrew F Dean
Matthew Berriman
Addenbrooke's Hospital · GBGenomics (United Kingdom) · GBWellcome Sanger Institute · GBCambridge University Hospitals NHS Foundation Trust · GBBiodiversity Research Center, Academia Sinica · TWHospital for Tropical Diseases · GBSt Thomas' Hospital · GB

Funding

Medical Research Council G0701652Wellcome TrustWellcome Trust 098051
6 · The paper itself

Abstract

backgroundSparganosis is an infection with a larval Diphyllobothriidea tapeworm. From a rare cerebral case presented at a clinic in the UK, DNA was recovered from a biopsy sample and used to determine the causative species as Spirometra erinaceieuropaei through sequencing of the cox1 gene. From the same DNA, we have produced a draft genome, the first of its kind for this species, and used it to perform a comparative genomics analysis and to investigate known and potential tapeworm drug targets in this tapeworm.

resultsThe 1.26 Gb draft genome of S. erinaceieuropaei is currently the largest reported for any flatworm. Through investigation of β-tubulin genes, we predict that S. erinaceieuropaei larvae are insensitive to the tapeworm drug albendazole. We find that many putative tapeworm drug targets are also present in S. erinaceieuropaei, allowing possible cross application of new drugs. In comparison to other sequenced tapeworm species we observe expansion of protease classes, and of Kuntiz-type protease inhibitors. Expanded gene families in this tapeworm also include those that are involved in processes that add post-translational diversity to the protein landscape, intracellular transport, transcriptional regulation and detoxification.

conclusionsThe S. erinaceieuropaei genome begins to give us insight into an order of tapeworms previously uncharacterized at the genome-wide level. From a single clinical case we have begun to sketch a picture of the characteristics of these organisms. Finally, our work represents a significant technological achievement as we present a draft genome sequence of a rare tapeworm, and from a small amount of starting material.

Indexed as

GenomeAnimalsBase SequenceBiopsyBrainDiphyllobothriumHigh-Throughput Nucleotide SequencingHumansSparganosisSpirometraUnited Kingdom

Identifiers

PMID25413302
PMCPMC4265353
OpenAlexW2125315587

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.