Evidence map›Paper›PMID 25412686›Full record

ArticleNature communications2014

Ambidextrous binding of cell and membrane bilayers by soluble matrix metalloproteinase-12.

Rama K Koppisetti, Yan G Fulcher, Alexander Jurkevich, Stephen H Prior, Jia Xu, Marc Lenoir, Michael Overduin, Steven R Van Doren

Open access · bronzeAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Multifaceted membrane binding head of the SARS-CoV-2 spike protein.Current research in structural biology · 2022
    Article
  6. Article
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  8. Review
  9. Article
  10. [Effects of arsenic trioxide on migration, invasion and apoptosis of hepatocellular carcinoma HepG2 cells].Sheng wu yi xue gong cheng xue za zhi = Journal of biomedical engineering = Shengwu yixue gongchengxue zazhi · 2020
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Peripheral membrane associations of matrix metalloproteinases.Biochimica et biophysica acta. Molecular cell research · 2017
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Rama K KoppisettiDepartment of Biochemistry, University of Missouri, 117 Schweitzer Hall, Columbia, Missouri 65211, USA.
Yan G FulcherDepartment of Biochemistry, University of Missouri, 117 Schweitzer Hall, Columbia, Missouri 65211, USA.
Alexander JurkevichMolecular Cytology Core, 120 Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, USA.
Stephen H PriorDepartment of Biochemistry, University of Missouri, 117 Schweitzer Hall, Columbia, Missouri 65211, USA.
Jia XuDepartment of Biochemistry, University of Missouri, 117 Schweitzer Hall, Columbia, Missouri 65211, USA.
Marc LenoirCollege of Medical and Dental Sciences, School of Cancer Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.
Michael OverduinCollege of Medical and Dental Sciences, School of Cancer Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.
Steven R Van DorenDepartment of Biochemistry, University of Missouri, 117 Schweitzer Hall, Columbia, Missouri 65211, USA.
University of Missouri · USUniversity of Birmingham · GB

Funding

TIMP/METALLOPROTEINASE STRUCTURE AND INTERACTIONSR01GM057289 · NIGMS · UNIVERSITY OF MISSOURI-COLUMBIA · PI VAN DOREN, STEVEN R · 1998 to 2014
$3.2M
800 MHZ SPECTROMETER FOR BIOMOLECULAR NMR: STRUCTURAL BIOLOGYS10RR022341 · NCRR · UNIVERSITY OF MISSOURI-COLUMBIA · PI VAN DOREN, STEVEN R · 2006 to 2006
$500k
Biotechnology and Biological Sciences Research Council BB/H024697/1Cancer Research UKNCRR NIH HHS S10 RR022341NIGMS NIH HHS R01 GM057289
6 · The paper itself

Abstract

Matrix metalloproteinases (MMPs) regulate tissue remodelling, inflammation and disease progression. Some soluble MMPs are inexplicably active near cell surfaces. Here we demonstrate the binding of MMP-12 directly to bilayers and cellular membranes using paramagnetic NMR and fluorescence. Opposing sides of the catalytic domain engage spin-labelled membrane mimics. Loops project from the β-sheet interface to contact the phospholipid bilayer with basic and hydrophobic residues. The distal membrane interface comprises loops on the other side of the catalytic cleft. Both interfaces mediate MMP-12 association with vesicles and cell membranes. MMP-12 binds plasma membranes and is internalized to hydrophobic perinuclear features, the nuclear membrane and inside the nucleus within minutes. While binding of TIMP-2 to MMP-12 hinders membrane interactions beside the active site, TIMP-2-inhibited MMP-12 binds vesicles and cells, suggesting compensatory rotation of its membrane approaches. MMP-12 association with diverse cell membranes may target its activities to modulate innate immune responses and inflammation.

Indexed as

AnimalsBinding SitesCatalytic DomainCell Line, TumorCell MembraneHeLa CellsHeparan Sulfate ProteoglycansHumansLipid BilayersMacrophagesMatrix Metalloproteinase 12MiceModels, MolecularMultiprotein ComplexesNuclear Magnetic Resonance, BiomolecularPhospholipidsHeparan Sulfate ProteoglycansLipid BilayersMatrix Metalloproteinase 12Multiprotein ComplexesPhospholipidsSpin LabelsTIMP2 protein, humanTissue Inhibitor of Metalloproteinase-2

Identifiers

PMID25412686
PMCPMC4242912
OpenAlexW1973972034

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.