Evidence map›Paper›PMID 25412659›Full record

ArticleCell research2014

Crystal structure of a TAF1-TAF7 complex in human transcription factor IID reveals a promoter binding module.

Hui Wang, Elizabeth C Curran, Thomas R Hinds, Edith H Wang, Ning Zheng

Open access · bronzeAbstract read
In one paragraph

Article in Cell research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The roles of TAF1 in neuroscience and beyond.Royal Society open science · 2024
    Review
  6. Article
  7. Representing mutations for predicting cancer drug response.Bioinformatics (Oxford, England) · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. What do Transcription Factors Interact With?Journal of molecular biology · 2021
    Review
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Hui Wang1] Department of Pharmacology, Box 357280, University of Washington, Seattle, WA 98195, USA [2] Howard Hughes Medical Institute, Box 357280, University of Washington, Seattle, WA 98195, USA.
Elizabeth C CurranDepartment of Pharmacology, Box 357280, University of Washington, Seattle, WA 98195, USA.
Thomas R Hinds1] Department of Pharmacology, Box 357280, University of Washington, Seattle, WA 98195, USA [2] Howard Hughes Medical Institute, Box 357280, University of Washington, Seattle, WA 98195, USA.
Edith H WangDepartment of Pharmacology, Box 357280, University of Washington, Seattle, WA 98195, USA.
Ning Zheng1] Department of Pharmacology, Box 357280, University of Washington, Seattle, WA 98195, USA [2] Howard Hughes Medical Institute, Box 357280, University of Washington, Seattle, WA 98195, USA.
University of Washington · US

Funding

TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
Howard Hughes Medical InstituteNIGMS NIH HHS T32 GM007270
6 · The paper itself

Abstract

The general transcription factor IID (TFIID) initiates RNA polymerase II-mediated eukaryotic transcription by nucleating pre-initiation complex formation at the core promoter of protein-encoding genes. TAF1, the largest integral subunit of TFIID, contains an evolutionarily conserved yet poorly characterized central core domain, whose specific mutation disrupts cell proliferation in the temperature-sensitive mutant hamster cell line ts13. Although the impaired TAF1 function in the ts13 mutant has been associated with defective transcriptional regulation of cell cycle genes, the mechanism by which TAF1 mediates transcription as part of TFIID remains unclear. Here, we present the crystal structure of the human TAF1 central core domain in complex with another conserved TFIID subunit, TAF7, which biochemically solubilizes TAF1. The TAF1-TAF7 complex displays an inter-digitated compact architecture, featuring an unexpected TAF1 winged helix (WH) domain mounted on top of a heterodimeric triple barrel. The single TAF1 residue altered in the ts13 mutant is buried at the junction of these two structural domains. We show that the TAF1 WH domain has intrinsic DNA-binding activity, which depends on characteristic residues that are commonly used by WH fold proteins for interacting with DNA. Importantly, mutations of these residues not only compromise DNA binding by TAF1, but also abrogate its ability to rescue the ts13 mutant phenotype. Together, our results resolve the structural organization of the TAF1-TAF7 module in TFIID and unveil a critical promoter-binding function of TAF1 in transcription regulation.

Indexed as

Amino Acid SequenceAnimalsBinding SitesCell LineCricetinaeCrystallography, X-RayDNAHistone AcetyltransferasesHumansModels, MolecularMolecular Sequence DataPromoter Regions, GeneticProtein ConformationTATA-Binding Protein Associated FactorsTranscription Factor TFIIDDNAHistone AcetyltransferasesTAF7 protein, humanTATA-binding protein associated factor 250 kDaTATA-Binding Protein Associated FactorsTranscription Factor TFIID

Identifiers

PMID25412659
PMCPMC4260347
OpenAlexW1967381699

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.