ArticlePloS one2014
Comparative transcriptomic analysis of the response to cold acclimation in Eucalyptus dunnii.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.
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Who cites it
11 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Pooled it
- Chromatin accessibility dynamics and a hierarchical transcriptional regulatory network for shoot apex cold stress inForestry research · 2026Article
- Gene Expression Profiling of Transcription Factors and Acclimation-Related Genes inInternational journal of molecular sciences · 2025Article
- Cold-induced biochemical changes in leaves of two commercial clones ofFrontiers in molecular biosciences · 2025Article
- A first de novo transcriptome assembly of feijoa (Acca sellowiana [Berg] Burret) reveals key genes involved in flavonoid biosynthesis.The plant genome · 2024Article
- Comparative Transcriptome Analysis Reveals Molecular Insights in Overwintering Monochamus alternatus (Coleoptera: Cerambycidae).Journal of insect science (Online) · 2022Article
- Gene expression profile indicates involvement of uniconazole inFood science & nutrition · 2020Article
- De novo transcriptome sequencing and gene expression profiling of Magnolia wufengensis in response to cold stress.BMC plant biology · 2019Article
- Transcript profiling for early stages during embryo development in Scots pine.BMC plant biology · 2016Article
- De novo assembly and analysis of the transcriptome of Ocimum americanum var. pilosum under cold stress.BMC genomics · 2016Article
- Seasonal Variation of Carbon Metabolism in the Cambial Zone of Eucalyptus grandis.Frontiers in plant science · 2016Article
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Eucalyptus dunnii is an important macrophanerophyte with high economic value. However, low temperature stress limits its productivity and distribution. To study the cold response mechanisms of E. dunnii, 5 cDNA libraries were constructed from mRNA extracted from leaves exposed to cold stress for varying lengths of time and were evaluated by RNA-Seq analysis. The assembly of the Illumina datasets was optimized using various assembly programs and parameters. The final optimized assembly generated 205,325 transcripts with an average length of 1,701 bp and N50 of 2,627 bp, representing 349.38 Mb of the E. dunnii transcriptome. Among these transcripts, 134,358 transcripts (65.4%) were annotated in the Nr database. According to the differential analysis results, most transcripts were up-regulated as the cold stress prolonging, suggesting that these transcripts may be involved in the response to cold stress. In addition, the cold-relevant GO categories, such as 'response to stress' and 'translational initiation', were the markedly enriched GO terms. The assembly of the E. dunnii gene index and the GO classification performed in this study will serve as useful genomic resources for the genetic improvement of E. dunnii and also provide insights into the molecular mechanisms of cold acclimation in E. dunnii.
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