Evidence map›Paper›PMID 25411163›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2015

Identification of a variant in KDR associated with serum VEGFR2 and pharmacodynamics of Pazopanib.

Michael L Maitland, Chun-Fang Xu, Yu-Ching Cheng, Emily Kistner-Griffin, Kathleen A Ryan, Theodore G Karrison, Soma Das, Dara Torgerson, Eric R Gamazon, Vasiliki Thomeas and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.

  1. Pooled it
  2. A Phase I Trial of the MET/OncoTargets and therapy · 2021
    Trial
  3. Trial
  4. Trial
  5. Article
  6. Review
  7. Identification of Key Genes and Pathways in Osteosarcoma by Bioinformatics Analysis.Computational and mathematical methods in medicine · 2022
    Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. PharmGKB summary: pazopanib pathway, pharmacokinetics.Pharmacogenetics and genomics · 2017
    Review
  13. Article
  14. Article
  15. Predictive biomarker candidates to delineate efficacy of antiangiogenic treatment in renal cell carcinoma.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 8 institutions in 3 countries.

Michael L MaitlandSection of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, Illinois. Committee on Clinical Pharmacology and Pharmacogenomics, University of Chicago, Chicago, Illinois. Comprehensive Cancer Center, University of Chicago, Chicago, Illinois. mmaitlan@medicine.bsd.uchicago.edu.
Chun-Fang XuGlaxo SmithKline Genetics, Stevenage, United Kingdom.
Yu-Ching ChengProgram in Personalized and Genomic Medicine, and Division of Endocrinology, Diabetes and Nutrition, School of Medicine, University of Maryland, Baltimore, Maryland.
Emily Kistner-GriffinDepartment of Health Studies, University of Chicago, Chicago, Illinois.
Kathleen A RyanProgram in Personalized and Genomic Medicine, and Division of Endocrinology, Diabetes and Nutrition, School of Medicine, University of Maryland, Baltimore, Maryland.
Theodore G KarrisonComprehensive Cancer Center, University of Chicago, Chicago, Illinois. Department of Health Studies, University of Chicago, Chicago, Illinois.
Soma DasComprehensive Cancer Center, University of Chicago, Chicago, Illinois. Department of Human Genetics, University of Chicago, Chicago, Illinois.
Dara TorgersonDepartment of Human Genetics, University of Chicago, Chicago, Illinois.
Eric R GamazonSection of Genetic Medicine, Department of Medicine, University of Chicago, Chicago, Illinois.
Vasiliki ThomeasSection of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, Illinois.
Matthew R LevineSection of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, Illinois.
Paul A WilsonGlaxo SmithKline Computation Biology, Stevenage, United Kingdom.
Nan BingGlaxo SmithKline Genetics, Research Triangle Park, North Carolina.
Yuan LiuGlaxo SmithKline Oncology, Philadelphia, Pennsylvania.
Lon R CardonGlaxo SmithKline Genetics, Philadelphia, Pennsylvania.
Lini N PanditeGlaxo SmithKline Oncology, Research Triangle Park, North Carolina.
Jeffrey R O'ConnellProgram in Personalized and Genomic Medicine, and Division of Endocrinology, Diabetes and Nutrition, School of Medicine, University of Maryland, Baltimore, Maryland.
Nancy J CoxCommittee on Clinical Pharmacology and Pharmacogenomics, University of Chicago, Chicago, Illinois. Comprehensive Cancer Center, University of Chicago, Chicago, Illinois. Department of Human Genetics, University of Chicago, Chicago, Illinois. Section of Genetic Medicine, Department of Medicine, University of Chicago, Chicago, Illinois.
Braxton D MitchellProgram in Personalized and Genomic Medicine, and Division of Endocrinology, Diabetes and Nutrition, School of Medicine, University of Maryland, Baltimore, Maryland.
Mark J RatainSection of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, Illinois. Committee on Clinical Pharmacology and Pharmacogenomics, University of Chicago, Chicago, Illinois. Comprehensive Cancer Center, University of Chicago, Chicago, Illinois.
Alan R ShuldinerProgram in Personalized and Genomic Medicine, and Division of Endocrinology, Diabetes and Nutrition, School of Medicine, University of Maryland, Baltimore, Maryland. Geriatric Research and Education Clinical Center, Baltimore Veterans Administration Medical Center, Baltimore, Maryland.
University of Maryland, Baltimore · USUniversity of Chicago · USUniversity of Illinois Chicago · USAge UK · GBChicago Department of Public Health · USResearch Triangle Park Foundation · USGlaxoSmithKline (United States) · USNew Frontier · US

Funding

Whole GenomeU01GM061393 · NIGMS · UNIVERSITY OF CHICAGO · PI RATAIN, MARK J · 2000 to 2014
$39.0M
TRANSLATIONAL RESEARCH UNIVERSITY OF CHICAGO: CLINICAL TRIALSUL1RR024999 · NCRR · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2007 to 2011
$25.3M
Re-Engineering Translational Research at the University of ChicagoUL1TR000430 · NCATS · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2012 to 2016
$20.2M
ZOLEDRONATE &OSTEOPOROTIC EFFECTS OF ANDROGEN DEPRIVATIM01RR000055 · NCRR · UNIVERSITY OF CHICAGO · PI BELL, GRAEME I · 1985 to 2007
$19.0M
Research BaseP30DK072488 · NIDDK · UNIVERSITY OF MARYLAND BALTIMORE · PI MITCHELL, BRAXTON D, TAYLOR, SIMEON I. · 2005 to 2019
$17.3M
Pharmacogenomics of Anti-platlet Intervention-2 (PAPI-2) StudyU01HL105198 · NHLBI · UNIVERSITY OF MARYLAND BALTIMORE · PI SHULDINER, ALAN R. · 2010 to 2014
$13.6M
Genome-wide Search for CVD Gene-Environment InteractionsU01HL072515 · NHLBI · UNIVERSITY OF MARYLAND BALTIMORE · PI SHULDINER, ALAN R. · 2002 to 2008
$11.2M
PHASE I CLINICAL TRIALS OF ANTICANCER AGENTSU01CA069852 · NCI · UNIVERSITY OF CHICAGO · PI RATAIN, MARK J · 1995 to 2013
$9.4M
Pharmacogenomics of CVD risk ReductionU01GM074518 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE · PI SHULDINER, ALAN R. · 2005 to 2009
$7.3M
Experimental Therapeutics: Clinical Trials Network with Phase I EmphasisUM1CA186705 · NCI · UNIVERSITY OF CHICAGO · PI MAITLAND, MICHAEL L., RATAIN, MARK J · 2014 to 2015
$987k
Translational Medicine and Cancer Therapy with Vasculature-Targeted AgentsK23CA124802 · NCI · UNIVERSITY OF CHICAGO · PI MAITLAND, MICHAEL L. · 2007 to 2011
$649k
NCATS NIH HHS UL1 TR000430NCI NIH HHS K23 CA124802NCI NIH HHS K23CA124802NCI NIH HHS U01 CA069852NCI NIH HHS U01CA69852NCI NIH HHS UM1 CA186705NCRR NIH HHS M01 RR000055NCRR NIH HHS UL1 RR024999NCRR NIH HHS UL1RR024999NHLBI NIH HHS U01 HL072515NHLBI NIH HHS U01 HL105198NHLBI NIH HHS U01HL105918NIDDK NIH HHS P30 DK072488NIGMS NIH HHS U01 GM061393NIGMS NIH HHS U01 GM074518NIGMS NIH HHS U01GM61393
6 · The paper itself

Abstract

purposeVEGF receptor (VEGFR) kinases are important drug targets in oncology that affect function of systemic endothelial cells. To discover genetic markers that affect VEGFR inhibitor pharmacodynamics, we performed a genome-wide association study of serum soluble vascular VEGFR2 concentrations [sVEGFR2], a pharmacodynamic biomarker for VEGFR2 inhibitors. EXPERIMENTAL

designWe conducted a genome-wide association study (GWAS) of [sVEGFR2] in 736 healthy Old Order Amish volunteers. Gene variants identified from the GWAS were genotyped serially in a cohort of 128 patients with advanced solid tumor with baseline [sVEGFR2] measurements, and in 121 patients with renal carcinoma with [sVEGFR2] measured before and during pazopanib therapy.

resultsrs34231037 (C482R) in KDR, the gene encoding sVEGFR2 was found to be highly associated with [sVEGFR2], explaining 23% of the variance (P = 2.7 × 10(-37)). Association of rs34231037 with [sVEGFR2] was replicated in 128 patients with cancer with comparable effect size (P = 0.025). Furthermore, rs34231037 was a significant predictor of changes in [sVEGFR2] in response to pazopanib (P = 0.01).

conclusionOur findings suggest that genome-wide analysis of phenotypes in healthy populations can expedite identification of candidate pharmacogenetic markers. Genotyping for germline variants in KDR may have clinical utility in identifying patients with cancer with unusual sensitivity to effects of VEGFR2 kinase inhibitors.

Indexed as

AdolescentAngiogenesis InhibitorsCarcinoma, Renal CellFemaleGenome-Wide Association StudyHumansIndazolesKidney NeoplasmsMalePolymorphism, Single NucleotidePyrimidinesSulfonamidesVascular Endothelial Growth Factor Receptor-2Young AdultAngiogenesis InhibitorsIndazolesKDR protein, humanpazopanibPyrimidinesSulfonamidesVascular Endothelial Growth Factor Receptor-2

Identifiers

PMID25411163
PMCPMC4323272
OpenAlexW2035873826

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.