Evidence map›Paper›PMID 25410588›Full record

ArticleJournal of the science of food and agriculture2015

The impact of systemic and copper pesticide applications on the phyllosphere microflora of tomatoes.

Andrea R Ottesen, Sasha Gorham, James B Pettengill, Steven Rideout, Peter Evans, Eric Brown

Abstract readComparative Study
In one paragraph

Article in Journal of the science of food and agriculture, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Andrea R OttesenMolecular Methods and Subtyping Branch, Division of Microbiology, Office of Regulatory Science, Center for Food Safety and Applied Nutrition, FDA, 5100 Paint Branch Parkway, College Park, MD 20740, USA.
Sasha Gorham
James B Pettengill
Steven Rideout
Peter Evans
Eric Brown

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundContamination of tomatoes by Salmonella can occur in agricultural settings. Little is currently understood about how agricultural inputs such as pesticide applications may impact epiphytic crop microflora and potentially play a role in contamination events. We examined the impact of two materials commonly used in Virginia tomato agriculture: acibenzolar-S-methyl (crop protectant) and copper oxychloride (pesticide) to identify the effects these materials may exert on baseline tomato microflora and on the incidence of three specific genera; Salmonella, Xanthomonas and Paenibacillus.

resultsApproximately 186 441 16S rRNA gene and 39 381 18S rRNA gene sequences per independent replicate were used to analyze the impact of the pesticide applications on tomato microflora. An average of 3 346 677 (634 892 974 bases) shotgun sequences per replicate were used for metagenomic analyses.

conclusionA significant decrease in the presence of Gammaproteobacteria was observed between controls and copper-treated plants, suggesting that copper is effective at suppressing growth of certain taxa in this class. A higher mean abundance of Salmonella and Paenibacillus in control samples compared to treatments may suggest that both systemic and copper applications diminish the presence of these genera in the phyllosphere; however, owing to the lack of statistical significance, this could also be due to other factors. The most distinctive separation of shared membership was observed in shotgun data between the two different sampling time-points (not between treatments), potentially supporting the hypothesis that environmental pressures may exert more selective pressures on epiphytic microflora than do certain agricultural management practices.

Indexed as

CopperPesticidesThiadiazolesCrop ProtectionCrops, AgriculturalFungiMetagenomicsMolecular TypingMycological Typing TechniquesPaenibacillusPhyllobacteriaceaePhylogenyPlant Components, AerialPrincipal Component AnalysisRNA, BacterialRNA, FungalCoppercopper oxychloridePesticidesRNA, BacterialRNA, FungalRNA, Ribosomal, 16SRNA, Ribosomal, 18SS-methyl benzo(1,2,3)thiadiazole-7-carbothioateThiadiazoles16S 18Smetagenomicphyllospherephytobiometomatoes

Identifiers

PMID25410588
PMCPMC4368374

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.