Evidence map›Paper›PMID 25410531›Full record

ArticleClinical genetics2015

A mutation creating an out-of-frame alternative translation initiation site in the GRHPR 5'UTR causing primary hyperoxaluria type II.

Y Fu, R Rope, S Fargue, H T Cohen, R P Holmes, D M Cohen

Abstract readCase Reports
In one paragraph

Article in Clinical genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. A mutation creating an upstream initiation codon in theMolecular genetics & genomic medicine · 2017
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Y FuDivision of Nephrology & Hypertension, Oregon Health & Science University and the Portland VA Medical Center, Portland, OR, 97239, USA.
R RopeDivision of Nephrology & Hypertension, Oregon Health & Science University and the Portland VA Medical Center, Portland, OR, 97239, USA.
S FargueDepartment of Urology, University of Alabama School of Medicine, Birmingham, AL, 35294, USA.
H T CohenRenal Section, Boston University School of Medicine, Boston, MA, 02118, USA.
R P HolmesDepartment of Urology, University of Alabama School of Medicine, Birmingham, AL, 35294, USA.
D M CohenDivision of Nephrology & Hypertension, Oregon Health & Science University and the Portland VA Medical Center, Portland, OR, 97239, USA.
Portland VA Medical Center · USUniversity of Alabama · USBoston University · US

Funding

Mitochondrial Metabolism in Primary HyperoxaluriaR01DK054468 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI HOLMES, ROSS P · 1999 to 2017
$4.1M
Genetics of water balanceR01DK084004 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI COHEN, DAVID M · 2010 to 2013
$1.4M
Polymorphism affecting water balanceI01BX000343 · VA · PORTLAND VA MEDICAL CENTER · PI COHEN, DAVID M · 2011 to 2013
–
BLRD VA I01 BX000343NIDDK NIH HHS R01 DK054468NIDDK NIH HHS R01 DK084004
6 · The paper itself

Abstract

Primary hyperoxaluria type II is a recessive genetic disorder caused by mutations in the GRHPR gene. Although several dozen mutations have been described, all affect coding or transcript splicing. A man suspected of having primary hyperoxaluria type II was heterozygous for a novel single-nucleotide deletion (c.694delC) in GRHPR affecting Gln(232) , which introduced a pre-mature termination (p.Gln232Argfs*3). Two 5'untranslated region (UTR) variants of unknown significance were also noted. We show that these two variants occur in cis, on the opposite allele, and introduce - immediately upstream of the canonical translation initiation site - a novel out-of-frame translational start site. In vitro studies using the GRHPR 5'UTR fused to a luciferase reporter show that the variant start site pre-empted initiation at the canonical translational start site, and this was corroborated within the broader context of 1.3 kb of the GRHPR proximal promoter. This latter mechanism may be underappreciated in general; reports of clinically significant functional variation of this type are extremely rare.

Indexed as

5' Untranslated RegionsFrameshift MutationPeptide Chain Initiation, TranslationalAdultAlcohol OxidoreductasesCodon, TerminatorHeterozygoteHumansHyperoxaluria, PrimaryMaleMiddle AgedSequence Deletion5' Untranslated RegionsAlcohol OxidoreductasesCodon, Terminatorglyoxylate reductasehumanhyperoxaluriamutationtranslation

Identifiers

PMID25410531
PMCPMC4437915
OpenAlexW1510382282

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.