Evidence map›Paper›PMID 25409504›Full record

ArticlePloS one2014

Biochemical and structural characterization of mycobacterial aspartyl-tRNA synthetase AspS, a promising TB drug target.

Sudagar S Gurcha, Veeraraghavan Usha, Jonathan A G Cox, Klaus Fütterer, Katherine A Abrahams, Apoorva Bhatt, Luke J Alderwick, Robert C Reynolds, Nicholas J Loman, VijayaShankar Nataraj and 6 more

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Hit Compounds and Associated Targets in IntracellularMolecules (Basel, Switzerland) · 2022
    Article
  3. Article
  4. Journal of enzyme inhibition and medicinal chemistry · 2021
    Article
  5. Article
  6. Article
  7. Article
  8. Mycobacterial drug discovery.RSC medicinal chemistry · 2020
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Sudagar S GurchaSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United Kingdom.
Veeraraghavan UshaSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United Kingdom.
Jonathan A G CoxSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United Kingdom.
Klaus FüttererSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United Kingdom.
Katherine A AbrahamsSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United Kingdom.
Apoorva BhattSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United Kingdom.
Luke J AlderwickSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United Kingdom.
Robert C ReynoldsDepartment of Chemistry, University of Alabama at Birmingham, College of Arts and Sciences, 1530 3rd Avenue South, Birmingham, Alabama, 35294-1240, United States of America.
Nicholas J LomanSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United Kingdom.
VijayaShankar NatarajSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United Kingdom.
Carlos AlemparteDiseases of the Developing World, GlaxoSmithKline, Severo Ochoa 2, 28760, Tres Cantos, Madrid, Spain.
David BarrosDiseases of the Developing World, GlaxoSmithKline, Severo Ochoa 2, 28760, Tres Cantos, Madrid, Spain.
Adrian J LloydDepartment of Life Sciences, University of Warwick, Coventry, CV4 7AL, United Kingdom.
Lluis BallellDiseases of the Developing World, GlaxoSmithKline, Severo Ochoa 2, 28760, Tres Cantos, Madrid, Spain.
Judith V HobrathOrganic Chemistry Department, Southern Research Institute, Birmingham, Alabama, 35205, United States of America.
Gurdyal S BesraSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United Kingdom.

Funding

Medical Research Council MR/J014370/1Medical Research Council MR/K012118/1Medical Research Council MR/L015080/1Wellcome TrustWellcome Trust 081569/Z/06/Z
6 · The paper itself

Abstract

The human pathogen Mycobacterium tuberculosis is the causative agent of pulmonary tuberculosis (TB), a disease with high worldwide mortality rates. Current treatment programs are under significant threat from multi-drug and extensively-drug resistant strains of M. tuberculosis, and it is essential to identify new inhibitors and their targets. We generated spontaneous resistant mutants in Mycobacterium bovis BCG in the presence of 10× the minimum inhibitory concentration (MIC) of compound 1, a previously identified potent inhibitor of mycobacterial growth in culture. Whole genome sequencing of two resistant mutants revealed in one case a single nucleotide polymorphism in the gene aspS at (535)GAC>(535)AAC (D179N), while in the second mutant a single nucleotide polymorphism was identified upstream of the aspS promoter region. We probed whole cell target engagement by overexpressing either M. bovis BCG aspS or Mycobacterium smegmatis aspS, which resulted in a ten-fold and greater than ten-fold increase, respectively, of the MIC against compound 1. To analyse the impact of inhibitor 1 on M. tuberculosis AspS (Mt-AspS) activity we over-expressed, purified and characterised the kinetics of this enzyme using a robust tRNA-independent assay adapted to a high-throughput screening format. Finally, to aid hit-to-lead optimization, the crystal structure of apo M. smegmatis AspS was determined to a resolution of 2.4 Å.

Indexed as

Amino Acid SequenceAntitubercular AgentsAspartate-tRNA LigaseCloning, MolecularCrystallography, X-RayDimerizationDrug Resistance, Multiple, BacterialHumansMicrobial Sensitivity TestsMolecular Sequence DataMycobacterium bovisMycobacterium smegmatisMycobacterium tuberculosisPiperidinesPolymorphism, Single NucleotideProtein BindingAntitubercular AgentsAspartate-tRNA LigasePiperidinesRecombinant Fusion ProteinsThiazoles

Identifiers

PMID25409504
PMCPMC4237437

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.