Evidence map›Paper›PMID 25409334›Full record

ArticlePloS one2014

Ex vivo response to histone deacetylase (HDAC) inhibitors of the HIV long terminal repeat (LTR) derived from HIV-infected patients on antiretroviral therapy.

Hao K Lu, Lachlan R Gray, Fiona Wightman, Paula Ellenberg, Gabriela Khoury, Wan-Jung Cheng, Talia M Mota, Steve Wesselingh, Paul R Gorry, Paul U Cameron and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 29 citations in OpenAlex.

  1. Broad activation of latent HIV-1 in vivo.Nature communications · 2016
    Trial
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Impact of Myeloid Reservoirs in HIV Cure Trials.Current HIV/AIDS reports · 2019
    Review
  12. Review
  13. Article
  14. Article
  15. Strategies to target non-T-cell HIV reservoirs.Current opinion in HIV and AIDS · 2016
    Review
  16. Global strategies are required to cure and eliminate HBV infection.Nature reviews. Gastroenterology & hepatology · 2016
    Review
  17. Article
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Hao K LuDepartment of Infectious Diseases, Monash University, Melbourne, Victoria, Australia; Centre for Biomedical Research, Burnet Institute, Melbourne, Victoria, Australia.
Lachlan R GrayDepartment of Infectious Diseases, Monash University, Melbourne, Victoria, Australia; Centre for Biomedical Research, Burnet Institute, Melbourne, Victoria, Australia.
Fiona WightmanDepartment of Infectious Diseases, Monash University, Melbourne, Victoria, Australia; Centre for Biomedical Research, Burnet Institute, Melbourne, Victoria, Australia.
Paula EllenbergDepartment of Infectious Diseases, Monash University, Melbourne, Victoria, Australia; Centre for Biomedical Research, Burnet Institute, Melbourne, Victoria, Australia.
Gabriela KhouryDepartment of Infectious Diseases, Monash University, Melbourne, Victoria, Australia; Centre for Biomedical Research, Burnet Institute, Melbourne, Victoria, Australia.
Wan-Jung ChengCentre for Biomedical Research, Burnet Institute, Melbourne, Victoria, Australia.
Talia M MotaDepartment of Infectious Diseases, Monash University, Melbourne, Victoria, Australia; Centre for Biomedical Research, Burnet Institute, Melbourne, Victoria, Australia; Department of Microbiology and Immunology, University of Melbourne, Melbourne, Victoria, Australia.
Steve WesselinghCentre for Biomedical Research, Burnet Institute, Melbourne, Victoria, Australia; South Australian Health and Medical Research Institute, Adelaide, Australia.
Paul R GorryDepartment of Infectious Diseases, Monash University, Melbourne, Victoria, Australia; Centre for Biomedical Research, Burnet Institute, Melbourne, Victoria, Australia; Department of Microbiology and Immunology, University of Melbourne, Melbourne, Victoria, Australia.
Paul U CameronDepartment of Infectious Diseases, Monash University, Melbourne, Victoria, Australia; Centre for Biomedical Research, Burnet Institute, Melbourne, Victoria, Australia; Infectious Disease Unit, Alfred Hospital, Melbourne, Victoria, Australia.
Melissa J ChurchillCentre for Biomedical Research, Burnet Institute, Melbourne, Victoria, Australia; Department of Microbiology, Monash University, Clayton, Victoria, Australia; Department of Medicine, Monash University, Clayton, Victoria, Australia.
Sharon R LewinDepartment of Infectious Diseases, Monash University, Melbourne, Victoria, Australia; Centre for Biomedical Research, Burnet Institute, Melbourne, Victoria, Australia; Infectious Disease Unit, Alfred Hospital, Melbourne, Victoria, Australia; Peter Doherty Institute, Melbourne University, Melbourne, Victoria, Australia.
Burnet Institute · AUMonash University · AUUniversity of Melbourne · AU

Funding

Viral reservoirs and sanctuaries in HAART - treated patients: role and mechanismsU19AI096109 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SCHACKER, TIMOTHY W · 2011 to 2015
$29.5M
NIAID NIH HHS U19 AI096109NIMH NIH HHS MH100594
6 · The paper itself

Abstract

Histone deacetylase inhibitors (HDACi) can induce human immunodeficiency virus (HIV) transcription from the HIV long terminal repeat (LTR). However, ex vivo and in vivo responses to HDACi are variable and the activity of HDACi in cells other than T-cells have not been well characterised. Here, we developed a novel assay to determine the activity of HDACi on patient-derived HIV LTRs in different cell types. HIV LTRs from integrated virus were amplified using triple-nested Alu-PCR from total memory CD4+ T-cells (CD45RO+) isolated from HIV-infected patients prior to and following suppressive antiretroviral therapy. NL4-3 or patient-derived HIV LTRs were cloned into the chromatin forming episomal vector pCEP4, and the effect of HDACi investigated in the astrocyte and epithelial cell lines SVG and HeLa, respectively. There were no significant differences in the sequence of the HIV LTRs isolated from CD4+ T-cells prior to and after 18 months of combination antiretroviral therapy (cART). We found that in both cell lines, the HDACi panobinostat, trichostatin A, vorinostat and entinostat activated patient-derived HIV LTRs to similar levels seen with NL4-3 and all patient derived isolates had similar sensitivity to maximum HDACi stimulation. We observed a marked difference in the maximum fold induction of luciferase by HDACi in HeLa and SVG, suggesting that the effect of HDACi may be influenced by the cellular environment. Finally, we observed significant synergy in activation of the LTR with vorinostat and the viral protein Tat. Together, our results suggest that the LTR sequence of integrated virus is not a major determinant of a functional response to an HDACi.

Indexed as

AdultAgedAnti-HIV AgentsBenzamidesCell LineHeLa CellsHistone Deacetylase InhibitorsHIV InfectionsHIV Long Terminal RepeatHumansHydroxamic AcidsIndolesObservational Studies as TopicPanobinostatPhylogenyPyridinesAnti-HIV AgentsBenzamidesentinostatHistone Deacetylase InhibitorsHydroxamic AcidsIndolesPanobinostatPyridinestat Gene Products, Human Immunodeficiency Virustrichostatin AVorinostat

Identifiers

PMID25409334
PMCPMC4237424
OpenAlexW1981495623

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.