Evidence map›Paper›PMID 25408690›Full record

ReviewFrontiers in microbiology2014

Expanding genomics of mycorrhizal symbiosis.

Alan Kuo, Annegret Kohler, Francis M Martin, Igor V Grigoriev

Open access · goldAbstract readReview
In one paragraph

Review in Frontiers in microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
5.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Ectomycorrhizal Community Shifts at a Former Uranium Mining Site.Journal of fungi (Basel, Switzerland) · 2023
    Article
  4. Article
  5. Fungal evolution: cellular, genomic and metabolic complexity.Biological reviews of the Cambridge Philosophical Society · 2020
    Article
  6. Review
  7. Review
  8. Article
  9. Fungal evolution: major ecological adaptations and evolutionary transitions.Biological reviews of the Cambridge Philosophical Society · 2019
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Hartig' net formation of Tricholoma vaccinum-spruce ectomycorrhiza in hydroponic cultures.Environmental science and pollution research international · 2015
    Article
  15. Fungal traits that drive ecosystem dynamics on land.Microbiology and molecular biology reviews : MMBR · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Alan KuoUnited States Department of Energy Joint Genome Institute Walnut Creek, CA, USA.
Annegret KohlerUMR, Lab of Excellence for Advanced Research on the Biology of TRee and Forest Ecosystems, Tree-Microbe Interactions, Institut National de la Recherche Agronomique, Université de Lorraine Nancy, France.
Francis M MartinUMR, Lab of Excellence for Advanced Research on the Biology of TRee and Forest Ecosystems, Tree-Microbe Interactions, Institut National de la Recherche Agronomique, Université de Lorraine Nancy, France.
Igor V GrigorievUnited States Department of Energy Joint Genome Institute Walnut Creek, CA, USA.
Joint Genome Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mycorrhizal symbiosis between soil fungi and plant roots is a ubiquitous mutualism that plays key roles in plant nutrition, soil health, and carbon cycling. The symbiosis evolved repeatedly and independently as multiple morphotypes [e.g., arbuscular mycorrhizae (AM), ectomycorrhizal (ECM)] in multiple fungal clades (e.g., phyla Glomeromycota, Ascomycota, Basidiomycota). The accessibility and cultivability of many mycorrhizal partners make them ideal models for symbiosis studies. Alongside molecular, physiological, and ecological investigations, sequencing led to the first three mycorrhizal fungal genomes, representing two morphotypes and three phyla. The genome of the ECM basidiomycete Laccaria bicolor showed that the mycorrhizal lifestyle can evolve through loss of plant cell wall-degrading enzymes (PCWDEs) and expansion of lineage-specific gene families such as short secreted protein (SSP) effectors. The genome of the ECM ascomycete Tuber melanosporum showed that the ECM type can evolve without expansion of families as in Laccaria, and thus a different set of symbiosis genes. The genome of the AM glomeromycete Rhizophagus irregularis showed that despite enormous phylogenetic distance and morphological difference from the other two fungi, symbiosis can involve similar solutions as symbiosis-induced SSPs and loss of PCWDEs. The three genomes provide a solid base for addressing fundamental questions about the nature and role of a vital mutualism.

Indexed as

GlomusLaccariamycorrhizaeRhizophagusTuber

Identifiers

PMID25408690
PMCPMC4219462
OpenAlexW2100134903

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.