ArticleJournal of visualized experiments : JoVE2014
Unraveling the unseen players in the ocean - a field guide to water chemistry and marine microbiology.
Article in Journal of visualized experiments : JoVE, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
22 citing papers in PubMed.
- Central carbon metabolism switching in lytic versus temperate coral reef viral communities.bioRxiv : the preprint server for biology · 2025Article
- Viralization as a microbial approach for enhancing coral reef restoration.The ISME journal · 2025Article
- Coral high molecular weight carbohydrates support opportunistic microbes in bacterioplankton from an algae-dominated reef.mSystems · 2024Article
- Metagenomic analysis of microbial communities and antibiotic resistant genes in the Tijuana river, and potential sources.Environmental pollution (Barking, Essex : 1987) · 2024Article
- Calorimetric measurement of energy and nutrient stimulation of microorganisms from the continental deep subsurface.Frontiers in microbiology · 2024Article
- HIARA study protocol: impacts of artificial coral reef development on fisheries, human livelihoods and health in southwestern Madagascar.Frontiers in public health · 2024Article
- Viral predation pressure on coral reefs.BMC biology · 2023Article
- Marine sponges maintain stable bacterial communities between reef sites with different coral to algae cover ratios.FEMS microbiology ecology · 2021Article
- Article
- Diel population and functional synchrony of microbial communities on coral reefs.Nature communications · 2019Article
- Elevated temperature drives kelp microbiome dysbiosis, while elevated carbon dioxide induces water microbiome disruption.PloS one · 2018Article
- A myovirus encoding both photosystem I and II proteins enhances cyclic electron flow in infected Prochlorococcus cells.Nature microbiology · 2017Article
- Variability and host density independence in inductions-based estimates of environmental lysogeny.Nature microbiology · 2017Article
- Bacterial Community Associated with the Reef CoralFrontiers in microbiology · 2017Article
- Global microbialization of coral reefs.Nature microbiology · 2016Article
- Lytic to temperate switching of viral communities.Nature · 2016Article
- SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data.Bioinformatics (Oxford, England) · 2016Article
- Nearshore Pelagic Microbial Community Abundance Affects Recruitment Success of Giant Kelp,Frontiers in microbiology · 2016Article
- Closing the gaps on the viral photosystem-I psaDCAB gene organization.Environmental microbiology · 2015Article
- Article
Corrections and comments
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Here we introduce a series of thoroughly tested and well standardized research protocols adapted for use in remote marine environments. The sampling protocols include the assessment of resources available to the microbial community (dissolved organic carbon, particulate organic matter, inorganic nutrients), and a comprehensive description of the viral and bacterial communities (via direct viral and microbial counts, enumeration of autofluorescent microbes, and construction of viral and microbial metagenomes). We use a combination of methods, which represent a dispersed field of scientific disciplines comprising already established protocols and some of the most recent techniques developed. Especially metagenomic sequencing techniques used for viral and bacterial community characterization, have been established only in recent years, and are thus still subjected to constant improvement. This has led to a variety of sampling and sample processing procedures currently in use. The set of methods presented here provides an up to date approach to collect and process environmental samples. Parameters addressed with these protocols yield the minimum on information essential to characterize and understand the underlying mechanisms of viral and microbial community dynamics. It gives easy to follow guidelines to conduct comprehensive surveys and discusses critical steps and potential caveats pertinent to each technique.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.