Evidence map›Paper›PMID 25407463›Full record

ArticleCurrent genetics2015

Effects of calmodulin on expression of lignin-modifying enzymes in Pleurotus ostreatus.

Takashi Suetomi, Takaiku Sakamoto, Yoshitaka Tokunaga, Toru Kameyama, Yoichi Honda, Hisatoshi Kamitsuji, Isamu Kameshita, Kousuke Izumitsu, Kazumi Suzuki, Toshikazu Irie

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In one paragraph

Article in Current genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Takashi SuetomiSchool of Environmental Science, University of Shiga Prefecture, 2500 Hassaka-cho, Hikone City, Shiga, 522-8533, Japan.
Takaiku Sakamoto
Yoshitaka Tokunaga
Toru Kameyama
Yoichi Honda
Hisatoshi Kamitsuji
Isamu Kameshita
Kousuke Izumitsu
Kazumi Suzuki
Toshikazu Irie
University of Shiga Prefecture · JPGifu Prefectural Research Institute for Forests · JPKagawa University · JPKyoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Previously, we suppressed the expression of genes encoding isozymes of lignin peroxidase (LiP) and manganese peroxidase (MnP) using a calmodulin (CaM) inhibitor, W7, in the white-rot fungus Phanerochaete chrysosporium; this suggested that CaM positively regulates their expression. Here, we studied the role of CaM in another white-rot fungus, Pleurotus ostreatus, which produces MnP and versatile peroxidase (VP), but not LiP. W7 upregulated Mn(2+)-dependent oxidation of guaiacol, suggesting that CaM negatively regulates the production of the enzymes. Suppression of CaM in P. ostreatus using RNAi also led to upregulation of enzyme activity, whereas overexpression of CaM in P. ostreatus caused downregulation. Real-time RT-PCR showed that MnP1-6 and VP3 levels in the CaM-knockdown strain were higher than those in the wild-type strain, while MnP-5 and -6 and VP1 and 2 levels in the CaM-overexpressing strain were lower than in the wild type. Moreover, we also found that another ligninolytic enzyme, laccase, which is not produced by P. chrysosporium, was negatively regulated by CaM in P. ostreatus similar to MnP and VP. Although overexpression of CaM did not reduce the ability of P. ostreatus to digest beech wood powder, the percentage of lignin remaining in the digest was slightly higher than in the wild-type strain digest.

Indexed as

CalmodulinGene Expression Regulation, FungalIsoenzymesLigninPeroxidasePeroxidasesPleurotusSulfonamidesCalmodulinIsoenzymesLigninlignin peroxidasemanganese peroxidasePeroxidasePeroxidasesSulfonamidesW 7

Identifiers

PMID25407463
OpenAlexW1974771080

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.