Evidence map›Paper›PMID 25406581›Full record

ArticleNature communications2014

Biallelic loss-of-function mutation in NIK causes a primary immunodeficiency with multifaceted aberrant lymphoid immunity.

Katharina L Willmann, Stefanie Klaver, Figen Doğu, Elisangela Santos-Valente, Wojciech Garncarz, Ivan Bilic, Emily Mace, Elisabeth Salzer, Cecilia Domínguez Conde, Heiko Sic and 15 more

Open access · hybridAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 147 citations in OpenAlex.

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  16. Inherited human RelB deficiency impairs innate and adaptive immunity to infection.Proceedings of the National Academy of Sciences of the United States of America · 2024
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19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 9 institutions in 6 countries.

Katharina L WillmannCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna 1090, Austria.
Stefanie Klaver1] CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna 1090, Austria [2] Department of Immunology, Institute of Biomedical Sciences, University of São Paulo, São Paulo 05508-900, Brazil.
Figen DoğuDepartment of Pediatric Immunology and Allergy, Ankara University Medical School, Ankara 06100, Turkey.
Elisangela Santos-ValenteCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna 1090, Austria.
Wojciech GarncarzCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna 1090, Austria.
Ivan BilicCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna 1090, Austria.
Emily MaceCenter for Human Immunobiology, Baylor College of Medicine and Texas Children's Hospital, Houston, Texas 77030, USA.
Elisabeth SalzerCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna 1090, Austria.
Cecilia Domínguez CondeCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna 1090, Austria.
Heiko SicCentre of Chronic Immunodeficiency, University Medical Centre Freiburg, Freiburg 79180, Germany.
Peter MájekCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna 1090, Austria.
Pinaki P BanerjeeCenter for Human Immunobiology, Baylor College of Medicine and Texas Children's Hospital, Houston, Texas 77030, USA.
Gregory I VladimerCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna 1090, Austria.
Sule HaskoloğluDepartment of Pediatric Immunology and Allergy, Ankara University Medical School, Ankara 06100, Turkey.
Musa Gökalp BolkentDepartment of Pediatric Immunology and Allergy, Ankara University Medical School, Ankara 06100, Turkey.
Alphan KüpesizDepartment of Pediatric Hematology, Akdeniz University Medical School, Antalya 07985, Turkey.
Antonio Condino-NetoDepartment of Immunology, Institute of Biomedical Sciences, University of São Paulo, São Paulo 05508-900, Brazil.
Jacques ColingeCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna 1090, Austria.
Giulio Superti-FurgaCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna 1090, Austria.
Winfried F PicklChristian Doppler Laboratory for Immunomodulation and Institute of Immunology, Center for Pathophysiology, Infectiology and Immunology, Medical University of Vienna, Vienna 1090, Austria.
Menno C van ZelmDepartment of Immunology, Erasmus MC, University Medical Center, Rotterdam 3015GE, The Netherlands.
Hermann EibelCentre of Chronic Immunodeficiency, University Medical Centre Freiburg, Freiburg 79180, Germany.
Jordan S OrangeCenter for Human Immunobiology, Baylor College of Medicine and Texas Children's Hospital, Houston, Texas 77030, USA.
Aydan IkincioğullarıDepartment of Pediatric Immunology and Allergy, Ankara University Medical School, Ankara 06100, Turkey.
Kaan Boztuğ1] CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna 1090, Austria [2] Department of Paediatrics and Adolescent Medicine, Medical University of Vienna, Vienna 1090, Austria.
CeMM Research Center for Molecular Medicine · ATAustrian Academy of Sciences · ATAnkara University · TRBaylor College of Medicine · USMedical University of Vienna · ATUniversity Medical Center Freiburg · DEAkdeniz University · TRErasmus MC · NLUniversidade de São Paulo · BR

Funding

Directing Function at the Natural Killer Cell Secretory Immunological SynapseR01AI067946 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ORANGE, JORDAN SCOTT · 2007 to 2019
$4.8M
Directing Function at the Natural Killer Cell Secretory Immunological SynapseR37AI067946 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Jordan Scott Orange · 2024 to 2026
$1.5M
Austrian Science Fund FWF Y 595European Research Council 310857NIAID NIH HHS R37 AI067946
6 · The paper itself

Abstract

Primary immunodeficiency disorders enable identification of genes with crucial roles in the human immune system. Here we study patients suffering from recurrent bacterial, viral and Cryptosporidium infections, and identify a biallelic mutation in the MAP3K14 gene encoding NIK (NF-κB-inducing kinase). Loss of kinase activity of mutant NIK, predicted by in silico analysis and confirmed by functional assays, leads to defective activation of both canonical and non-canonical NF-κB signalling. Patients with mutated NIK exhibit B-cell lymphopenia, decreased frequencies of class-switched memory B cells and hypogammaglobulinemia due to impaired B-cell survival, and impaired ICOSL expression. Although overall T-cell numbers are normal, both follicular helper and memory T cells are perturbed. Natural killer (NK) cells are decreased and exhibit defective activation, leading to impaired formation of NK-cell immunological synapses. Collectively, our data illustrate the non-redundant role for NIK in human immune responses, demonstrating that loss-of-function mutations in NIK can cause multiple aberrations of lymphoid immunity.

Indexed as

AgammaglobulinemiaBacterial InfectionsB-LymphocytesChild, PreschoolComputer SimulationCryptosporidiosisFemaleHumansImmunoglobulin Class SwitchingImmunologic Deficiency SyndromesImmunologic MemoryInducible T-Cell Co-Stimulator LigandInfantKiller Cells, NaturalLeukocyte CountLymphocyte CountICOSLG protein, humanInducible T-Cell Co-Stimulator LigandNF-kappaB-Inducing KinaseProtein Serine-Threonine Kinases

Identifiers

PMID25406581
PMCPMC4263125
OpenAlexW2050309372

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.