Evidence map›Paper›PMID 25406510›Full record

ArticleScientific reports2014

A marine inducible prophage vB_CibM-P1 isolated from the aerobic anoxygenic phototrophic bacterium Citromicrobium bathyomarinum JL354.

Qiang Zheng, Rui Zhang, Yongle Xu, Richard Allen White, Yu Wang, Tingwei Luo, Nianzhi Jiao

Abstract read
In one paragraph

Article in Scientific reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. An InducibleViruses · 2022
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Comparative Omics and Trait Analyses of MarineFrontiers in microbiology · 2017
    Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Qiang ZhengState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen 361005, P.R. China.
Rui ZhangState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen 361005, P.R. China.
Yongle XuState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen 361005, P.R. China.
Richard Allen WhiteDepartment of Microbiology and Immunology, University of British Columbia, Vancouver, B.C., Canada V6N 1Z4.
Yu WangState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen 361005, P.R. China.
Tingwei LuoState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen 361005, P.R. China.
Nianzhi JiaoState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen 361005, P.R. China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A prophage vB_CibM-P1 was induced by mitomycin C from the epipelagic strain Citromicrobium bathyomarinum JL354, a member of the alpha-IV subcluster of marine aerobic anoxygenic phototrophic bacteria (AAPB). The induced bacteriophage vB_CibM-P1 had Myoviridae-like morphology and polyhedral heads (approximately capsid 60-100 nm) with tail fibers. The vB_CibM-P1 genome is ~38 kb in size, with 66.0% GC content. The genome contains 58 proposed open reading frames that are involved in integration, DNA packaging, morphogenesis and bacterial lysis. VB_CibM-P1 is a temperate phage that can be directly induced in hosts. In response to mitomycin C induction, virus-like particles can increase to 7 × 10(9) per ml, while host cells decrease an order of magnitude. The vB_CibM-P1 bacteriophage is the first inducible prophage from AAPB.

Indexed as

Genome, ViralAerobiosisAlphaproteobacteriaAquatic OrganismsBase CompositionDNA PackagingGenome SizeLysogenyMitomycinMolecular Sequence AnnotationMyoviridaeOpen Reading FramesPhototrophic ProcessesPhylogenyProphagesViral ProteinsMitomycinViral Proteins

Identifiers

PMID25406510
PMCPMC4236739

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.