Evidence map›Paper›PMID 25406339›Full record

ArticleJournal of the American Society of Nephrology : JASN2015

Deficient Autophagy Results in Mitochondrial Dysfunction and FSGS.

Takahisa Kawakami, Ivan G Gomez, Shuyu Ren, Kelly Hudkins, Allie Roach, Charles E Alpers, Stuart J Shankland, Vivette D D'Agati, Jeremy S Duffield

Open access · bronzeAbstract read
In one paragraph

Article in Journal of the American Society of Nephrology : JASN, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed, 1 pooled it
9.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 1 synthesis or guideline pooled it, 172 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Chronic exposure to low levels of glyphosate and metals induces kidney dysfunction.Toxicological sciences : an official journal of the Society of Toxicology · 2026
    Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. A novelRenal failure · 2025
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Autophagy: a double-edged sword in ischemia-reperfusion injury.Cellular & molecular biology letters · 2025
    Review
  15. Review
  16. Review
  17. Review
  18. Article
  19. Article
  20. Review

54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Takahisa KawakamiDivision of Nephrology, Departments of Medicine & Pathology, and Institute for Stem Cell & Regenerative Medicine, University of Washington, Seattle, Washington; Division of Nephrology and Endocrinology, The University of Tokyo, Tokyo, Japan;
Ivan G GomezDivision of Nephrology, Departments of Medicine & Pathology, and Institute for Stem Cell & Regenerative Medicine, University of Washington, Seattle, Washington; Division of Nephrology and Endocrinology, The University of Tokyo, Tokyo, Japan;
Shuyu RenDivision of Nephrology, Departments of Medicine & Pathology, and Institute for Stem Cell & Regenerative Medicine, University of Washington, Seattle, Washington; Biogen Idec, Inc., Cambridge, Massachusetts; and.
Kelly HudkinsDivision of Nephrology, Departments of Medicine & Pathology, and.
Allie RoachDivision of Nephrology, Departments of Medicine & Pathology, and Institute for Stem Cell & Regenerative Medicine, University of Washington, Seattle, Washington; Biogen Idec, Inc., Cambridge, Massachusetts; and.
Charles E AlpersDivision of Nephrology, Departments of Medicine & Pathology, and.
Stuart J ShanklandDivision of Nephrology, Departments of Medicine & Pathology, and.
Vivette D D'AgatiDepartment of Pathology, Columbia University, New York, New York.
Jeremy S DuffieldDivision of Nephrology, Departments of Medicine & Pathology, and Institute for Stem Cell & Regenerative Medicine, University of Washington, Seattle, Washington; Biogen Idec, Inc., Cambridge, Massachusetts; and jeremy.duffield@biogenidec.com.
Biogen (United States) · USColumbia University · USThe University of Tokyo · JPUniversity of Washington · US

Funding

Using iPSCs to model patient outcomes in nephrotic syndromeUH3TR000504 · NCATS · UNIVERSITY OF WASHINGTON · PI HIMMELFARB, JONATHAN · 2014 to 2016
$6.1M
Pericyte-endothelial cross talk in vascular stability after kidney injuryR01DK093493 · NIDDK · UNIVERSITY OF WASHINGTON · PI SHANKLAND, STUART JAMES · 2012 to 2016
$2.5M
A Tissue Engineered Human Kidney Microphysiological SystemUH2TR000504 · NCATS · UNIVERSITY OF WASHINGTON · PI HIMMELFARB, JONATHAN · 2012 to 2013
$2.1M
The role of Macrophage Delivered WNT Signaling in kidney injury and repairR01DK084077 · NIDDK · UNIVERSITY OF WASHINGTON · PI SHANKLAND, STUART JAMES · 2009 to 2013
$1.8M
Kidney Progenitor Cells in DiseaseR24DK094768 · NIDDK · UNIVERSITY OF WASHINGTON · PI GROSS, KENNETH W, PRUITT, STEVEN C · 2012 to 2012
$533k
NCATS NIH HHS TR000504NCATS NIH HHS UH2 TR000504NCATS NIH HHS UH3 TR000504NIDDK NIH HHS DK84077NIDDK NIH HHS DK93493NIDDK NIH HHS DK94768NIDDK NIH HHS R01 DK084077NIDDK NIH HHS R01 DK093493NIDDK NIH HHS R24 DK094768
6 · The paper itself

Abstract

FSGS is a heterogeneous fibrosing disease of the kidney, the cause of which remains poorly understood. In most cases, there is no effective treatment to halt or retard progression to renal failure. Increasing evidence points to mitochondrial dysfunction and the generation of reactive oxygen species in the pathogenesis of CKD. Autophagy, a major intracellular lysosomal degradation system, performs homeostatic functions linked to metabolism and organelle turnover. We prevented normal autophagic pathways in nephrons of mice by mutating critical autophagy genes ATG5 or ATG7 during nephrogenesis. Mutant mice developed mild podocyte and tubular dysfunction within 2 months, profound glomerular and tubular changes bearing close similarity to human disease by 4 months, and organ failure by 6 months. Ultrastructurally, podocytes and tubular cells showed vacuolization, abnormal mitochondria, and evidence of endoplasmic reticulum stress, features that precede the appearance of histologic or clinical disease. Similar changes were observed in human idiopathic FSGS kidney biopsy specimens. Biochemical analysis of podocytes and tubules of 2-month-old mutant mice revealed elevated production of reactive oxygen species, activation of endoplasmic reticulum stress pathways, phosphorylation of p38, and mitochondrial dysfunction. Furthermore, cultured proximal tubule cells isolated from mutant mice showed marked mitochondrial dysfunction and elevated mitochondrial reactive oxygen species generation that was suppressed by a mitochondrial superoxide scavenger. We conclude that mitochondrial dysfunction and endoplasmic reticulum stress due to impaired autophagic organelle turnover in podocytes and tubular epithelium are sufficient to cause many of the manifestations of FSGS in mice.

Indexed as

AnimalsAutophagyAutophagy-Related Protein 5Autophagy-Related Protein 7Disease Models, AnimalEndoplasmic Reticulum StressGlomerulosclerosis, Focal SegmentalHumansMiceMicrotubule-Associated ProteinsMitochondriaMutationPodocytesReactive Oxygen SpeciesRetrospective StudiesUrotheliumAtg5 protein, mouseAtg7 protein, mouseAutophagy-Related Protein 5Autophagy-Related Protein 7Microtubule-Associated ProteinsReactive Oxygen SpeciesAutophagyfocal segmental glomerulosclerosismitochondria

Identifiers

PMID25406339
PMCPMC4413752
OpenAlexW1979036772

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.