Evidence map›Paper›PMID 25406310›Full record

ArticleThe Journal of biological chemistry2014

Whirlin and PDZ domain-containing 7 (PDZD7) proteins are both required to form the quaternary protein complex associated with Usher syndrome type 2.

Qian Chen, Junhuang Zou, Zuolian Shen, Weiping Zhang, Jun Yang

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 58 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Liquid-liquid phase separation in hair cell stereocilia development and maintenance.Computational and structural biotechnology journal · 2023
    Review
  10. Article
  11. Article
  12. Review
  13. Review
  14. Characteristics of Retinitis Pigmentosa Associated withInternational journal of molecular sciences · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. USH2A-retinopathy: From genetics to therapeutics.Experimental eye research · 2020
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Qian ChenFrom the Department of Ophthalmology and Visual Sciences, John A. Moran Eye Center.
Junhuang ZouFrom the Department of Ophthalmology and Visual Sciences, John A. Moran Eye Center.
Zuolian ShenFrom the Department of Ophthalmology and Visual Sciences, John A. Moran Eye Center.
Weiping ZhangFrom the Department of Ophthalmology and Visual Sciences, John A. Moran Eye Center.
Jun YangFrom the Department of Ophthalmology and Visual Sciences, John A. Moran Eye Center, the Department of Neurobiology and Anatomy, and the Department of Otolaryngology Head and Neck Surgery, University of Utah, Salt Lake City, Utah 84132 jun.yang@hsc.utah.edu.
University of Utah · US

Funding

University of Utah, Core Vision Research GrantP30EY014800 · NEI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI PAUL STEVEN BERNSTEIN · 2005 to 2026
$14.6M
Formation and New Components of the Usher 2 Protein Complex in PhotoreceptorsR01EY020853 · NEI · UNIVERSITY OF UTAH · PI YANG, JUN · 2011 to 2015
$1.6M
NEI NIH HHS EY014800NEI NIH HHS EY020853NEI NIH HHS P30 EY014800NEI NIH HHS R01 EY020853
6 · The paper itself

Abstract

Usher syndrome (USH) is the leading genetic cause of combined hearing and vision loss. Among the three USH clinical types, type 2 (USH2) occurs most commonly. USH2A, GPR98, and WHRN are three known causative genes of USH2, whereas PDZD7 is a modifier gene found in USH2 patients. The proteins encoded by these four USH genes have been proposed to form a multiprotein complex, the USH2 complex, due to interactions found among some of these proteins in vitro, their colocalization in vivo, and mutual dependence of some of these proteins for their normal in vivo localizations. However, evidence showing the formation of the USH2 complex is missing, and details on how this complex is formed remain elusive. Here, we systematically investigated interactions among the intracellular regions of the four USH proteins using colocalization, yeast two-hybrid, and pull-down assays. We show that multiple domains of the four USH proteins interact among one another. Importantly, both WHRN and PDZD7 are required for the complex formation with USH2A and GPR98. In this USH2 quaternary complex, WHRN prefers to bind to USH2A, whereas PDZD7 prefers to bind to GPR98. Interaction between WHRN and PDZD7 is the bridge between USH2A and GPR98. Additionally, the USH2 quaternary complex has a variable stoichiometry. These findings suggest that a non-obligate, short term, and dynamic USH2 quaternary protein complex may exist in vivo. Our work provides valuable insight into the physiological role of the USH2 complex in vivo and informs possible reconstruction of the USH2 complex for future therapy.

Indexed as

Amino Acid SequenceAnimalsCarrier ProteinsChlorocebus aethiopsCOS CellsExtracellular Matrix ProteinsHEK293 CellsHumansMembrane ProteinsMicePDZ DomainsProtein BindingProtein MultimerizationProtein Structure, QuaternaryReceptors, G-Protein-CoupledTwo-Hybrid System TechniquesAdgrv1 protein, mouseCarrier ProteinsExtracellular Matrix ProteinsMembrane ProteinsPDZD7 protein, mouseReceptors, G-Protein-CoupledUsh2a protein, mouseWhrn protein, mouseGPR98Hair CellPDZD7PDZ DomainPhotoreceptorProtein ComplexProtein-Protein InteractionUSH2AUsher SyndromeWHRN

Identifiers

PMID25406310
PMCPMC4276872
OpenAlexW2085651827

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.