Evidence map›Paper›PMID 25405999›Full record

ArticlePloS one2014

Denatured mammalian protein mixtures exhibit unusually high solubility in nucleic acid-free pure water.

Junichiro Futami, Haruna Fujiyama, Rie Kinoshita, Hidenori Nonomura, Tomoko Honjo, Hiroko Tada, Hirokazu Matsushita, Yoshito Abe, Kazuhiro Kakimi

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Junichiro FutamiDepartment of Biotechnology, Graduate School of Natural Science and Technology, Okayama University, Okayama, Japan.
Haruna FujiyamaDepartment of Biotechnology, Graduate School of Natural Science and Technology, Okayama University, Okayama, Japan.
Rie KinoshitaDepartment of Biotechnology, Graduate School of Natural Science and Technology, Okayama University, Okayama, Japan.
Hidenori NonomuraDepartment of Biotechnology, Graduate School of Natural Science and Technology, Okayama University, Okayama, Japan.
Tomoko HonjoDepartment of Biotechnology, Graduate School of Natural Science and Technology, Okayama University, Okayama, Japan.
Hiroko TadaDepartment of Biotechnology, Graduate School of Natural Science and Technology, Okayama University, Okayama, Japan.
Hirokazu MatsushitaDepartment of Immunotherapeutics, The University of Tokyo Hospital, Tokyo, Japan.
Yoshito AbeDepartment of Protein Structure, Function and Design, Graduate School of Pharmaceutical Sciences, Kyushu University, Fukuoka, Japan.
Kazuhiro KakimiDepartment of Immunotherapeutics, The University of Tokyo Hospital, Tokyo, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Preventing protein aggregation is a major goal of biotechnology. Since protein aggregates are mainly comprised of unfolded proteins, protecting against denaturation is likely to assist solubility in an aqueous medium. Contrary to this concept, we found denatured total cellular protein mixture from mammalian cell kept high solubility in pure water when the mixture was nucleic acids free. The lysates were prepared from total cellular protein pellet extracted by using guanidinium thiocyanate-phenol-chloroform mixture of TRIzol, denatured and reduced total protein mixtures remained soluble after extensive dialysis against pure water. The total cell protein lysates contained fully disordered proteins that readily formed large aggregates upon contact with nucleic acids or salts. These findings suggested that the highly flexible mixtures of disordered proteins, which have fully ionized side chains, are protected against aggregation. Interestingly, this unusual solubility is characteristic of protein mixtures from higher eukaryotes, whereas most prokaryotic protein mixtures were aggregated under identical conditions. This unusual solubility of unfolded protein mixtures could have implications for the study of intrinsically disordered proteins in a variety of cells.

Indexed as

Protein DenaturationAnimalsBlotting, WesternCell Line, TumorChloroformEscherichia coliGuanidinesHEK293 CellsHeLa CellsHumansMagnetic Resonance SpectroscopyMiceNucleic AcidsPhenolsPlasmidsProteinsChloroformGuanidinesguanidine thiocyanateNucleic AcidsPhenolsProteinsThiocyanatesWater

Identifiers

PMID25405999
PMCPMC4236158

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.