ArticlePloS one2014
Transcriptome and allele specificity associated with a 3BL locus for Fusarium crown rot resistance in bread wheat.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.
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Who cites it
28 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Identification of Key Gene Network Modules and Hub Genes Associated with Wheat Response to Biotic Stress Using Combined Microarray Meta-analysis and WGCN Analysis.Molecular biotechnology · 2023Pooled it
- Genetic Architecture and Molecular Mechanisms of Fusarium Crown Rot Resistance in Wheat.Plant, cell & environment · 2026Review
- Crown rot in wheat: pathogen biology, host responses, and management strategies.Stress biology · 2025Review
- Genome-wide linkage mapping of Fusarium head blight resistance in common wheat (Frontiers in plant science · 2025Article
- Genome-Wide Association Studies on Chinese Wheat Cultivars Reveal a NovelPlants (Basel, Switzerland) · 2024Article
- A novel QTL conferring Fusarium crown rot resistance on chromosome 2A in a wheat EMS mutant.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Fine mapping of a Fusarium crown rot resistant locus on chromosome arm 6HL in barley by exploiting near isogenic lines, transcriptome profiling, and a large near isogenic line-derived population.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Transcriptomic profiling of near-isogenic lines reveals candidate genes for a significant locus conferring metribuzin resistance in wheat.BMC plant biology · 2023Article
- Comprehensive analysis of pathogen-responsive wheat NAC transcription factors: new candidates for crop improvement.G3 (Bethesda, Md.) · 2022Article
- Pathogen-induced biosynthetic pathways encode defense-related molecules in bread wheat.Proceedings of the National Academy of Sciences of the United States of America · 2022Article
- Characterization and fine mapping of a lesion mimic mutant (Lm5) with enhanced stripe rust and powdery mildew resistance in bread wheat (Triticum aestivum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Transcriptome Analyses of Near Isogenic Lines Reveal Putative Drought Tolerance Controlling Genes in Wheat.Frontiers in plant science · 2022Article
- Plant PhysioSpace: a robust tool to compare stress response across plant species.Plant physiology · 2021Article
- Comparing transcriptional responses to Fusarium crown rot in wheat and barley identified an important relationship between disease resistance and drought tolerance.BMC plant biology · 2021Article
- Genetics of Resistance to Common Root Rot (Spot Blotch),Frontiers in genetics · 2021Review
- Investigation and Genome-Wide Association Analysis of Fusarium Seedling Blight Resistance in Chinese Elite Wheat Lines.Frontiers in plant science · 2021Article
- Identification of a novel genomic region associated with resistance to Fusarium crown rot in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Identification and characterization of mRNAs and lncRNAs of a barley shrunken endosperm mutant using RNA-seq.Genetica · 2020Article
- Validation and delineation of a locus conferring Fusarium crown rot resistance on 1HL in barley by analysing transcriptomes from multiple pairs of near isogenic lines.BMC genomics · 2019Article
- Serpins: Genome-Wide Characterisation and Expression Analysis of the Serine Protease Inhibitor Family inG3 (Bethesda, Md.) · 2019Article
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Authors and funding
15 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Fusarium pathogens cause two major diseases in cereals, Fusarium crown rot (FCR) and head blight (FHB). A large-effect locus conferring resistance to FCR disease was previously located to chromosome arm 3BL (designated as Qcrs-3B) and several independent sets of near isogenic lines (NILs) have been developed for this locus. In this study, five sets of the NILs were used to examine transcriptional changes associated with the Qcrs-3B locus and to identify genes linked to the resistance locus as a step towards the isolation of the causative gene(s). Of the differentially expressed genes (DEGs) detected between the NILs, 12.7% was located on the single chromosome 3B. Of the expressed genes containing SNP (SNP-EGs) detected, 23.5% was mapped to this chromosome. Several of the DEGs and SNP-EGs are known to be involved in host-pathogen interactions, and a large number of the DEGs were among those detected for FHB in previous studies. Of the DEGs detected, 22 were mapped in the Qcrs-3B interval and they included eight which were detected in the resistant isolines only. The enrichment of DEG, and not necessarily those containing SNPs between the resistant and susceptible isolines, around the Qcrs-3B locus is suggestive of local regulation of this region by the resistance allele. Functions for 13 of these DEGs are known. Of the SNP-EGs, 28 were mapped in the Qcrs-3B interval and biological functions for 16 of them are known. These results provide insights into responses regulated by the 3BL locus and identify a tractable number of target genes for fine mapping and functional testing to identify the causative gene(s) at this QTL.
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