Evidence map›Paper›PMID 25404878›Full record

ArticleClinical proteomics2014

Host response profile of human brain proteome in toxoplasma encephalitis co-infected with HIV.

Apeksha Sahu, Satwant Kumar, Sreelakshmi K Sreenivasamurthy, Lakshmi Dhevi N Selvan, Anil K Madugundu, Soujanya D Yelamanchi, Vinuth N Puttamallesh, Gourav Dey, Abhijith K Anil, Anand Srinivasan and 7 more

Open access · goldAbstract read
In one paragraph

Article in Clinical proteomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 18 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 2 countries.

Apeksha SahuInstitute of Bioinformatics, International Technology Park, Bangalore, 560066 India ; Bioinformatics Centre, School of Life Sciences, Pondicherry University, Puducherry, 605014 India.
Satwant KumarInstitute of Bioinformatics, International Technology Park, Bangalore, 560066 India.
Sreelakshmi K SreenivasamurthyInstitute of Bioinformatics, International Technology Park, Bangalore, 560066 India ; Manipal University, Madhav Nagar, Manipal, 576104 India.
Lakshmi Dhevi N SelvanInstitute of Bioinformatics, International Technology Park, Bangalore, 560066 India ; Amrita School of Biotechnology, Amrita University, Kollam, 690525 India.
Anil K MadugunduInstitute of Bioinformatics, International Technology Park, Bangalore, 560066 India ; Bioinformatics Centre, School of Life Sciences, Pondicherry University, Puducherry, 605014 India.
Soujanya D YelamanchiInstitute of Bioinformatics, International Technology Park, Bangalore, 560066 India ; School of Biotechnology, KIIT University, Bhubaneswar, 751024 India.
Vinuth N PuttamalleshInstitute of Bioinformatics, International Technology Park, Bangalore, 560066 India.
Gourav DeyInstitute of Bioinformatics, International Technology Park, Bangalore, 560066 India ; Manipal University, Madhav Nagar, Manipal, 576104 India.
Abhijith K AnilArmed Forces Medical College, Pune, 411040 India.
Anand SrinivasanDepartment of Pharmacology, Postgraduate Institute of Medical Education & Research, Chandigarh, 160012 India.
Kanchan K MukherjeeDepartment of Neurosurgery, Postgraduate Institute of Medical Education & Research, Chandigarh, 160012 India.
Harsha GowdaInstitute of Bioinformatics, International Technology Park, Bangalore, 560066 India.
Parthasarathy SatishchandraDepartment of Neurology, National Institute of Mental Health and Neurosciences, Bangalore, 560029 India.
Anita MahadevanDepartment of Neuropathology, National Institute of Mental Health and Neurosciences, Bangalore, 560029 India ; Human Brain Tissue Repository, Neurobiology Research Centre, National Institute of Mental Health and Neurosciences, Bangalore, 560029 India.
Akhilesh PandeyMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205 USA ; Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 1205 USA ; Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21205 USA ; The Sol Goldman Pancreatic Cancer Research Center, Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21205 USA.
Thottethodi Subrahmanya Keshava PrasadInstitute of Bioinformatics, International Technology Park, Bangalore, 560066 India ; Bioinformatics Centre, School of Life Sciences, Pondicherry University, Puducherry, 605014 India ; Manipal University, Madhav Nagar, Manipal, 576104 India ; Amrita School of Biotechnology, Amrita University, Kollam, 690525 India ; NIMHANS-IOB Proteomics and Bioinformatics Laboratory, Neurobiology Research Centre, National Institute of Mental Health and Neurosciences, Bangalore, 560029 India.
Susarla Krishna ShankarDepartment of Neuropathology, National Institute of Mental Health and Neurosciences, Bangalore, 560029 India ; Human Brain Tissue Repository, Neurobiology Research Centre, National Institute of Mental Health and Neurosciences, Bangalore, 560029 India.
Institute of Bioinformatics · INNational Institute of Mental Health and Neurosciences · INPost Graduate Institute of Medical Education and Research · INArmed Forces Medical College · INJohns Hopkins Medicine · USManipal Academy of Higher Education · IN

Funding

Role of CNS Opportunistic Infections in Subsequent Development of HIV EncephalitiR01NS055628 · NINDS · JOHNS HOPKINS UNIVERSITY · PI PARDO-VILLAMIZAR, CARLOS A · 2008 to 2012
$1.6M
NINDS NIH HHS R01 NS055628
6 · The paper itself

Abstract

backgroundToxoplasma encephalitis is caused by the opportunistic protozoan parasite Toxoplasma gondii. Primary infection with T. gondii in immunocompetent individuals remains largely asymptomatic. In contrast, in immunocompromised individuals, reactivation of the parasite results in severe complications and mortality. Molecular changes at the protein level in the host central nervous system and proteins associated with pathogenesis of toxoplasma encephalitis are largely unexplored. We used a global quantitative proteomic strategy to identify differentially regulated proteins and affected molecular networks in the human host during T. gondii infection with HIV co-infection.

resultsWe identified 3,496 proteins out of which 607 proteins were differentially expressed (≥1.5-fold) when frontal lobe of the brain from patients diagnosed with toxoplasma encephalitis was compared to control brain tissues. We validated differential expression of 3 proteins through immunohistochemistry, which was confirmed to be consistent with mass spectrometry analysis. Pathway analysis of differentially expressed proteins indicated deregulation of several pathways involved in antigen processing, immune response, neuronal growth, neurotransmitter transport and energy metabolism.

conclusionsGlobal quantitative proteomic approach adopted in this study generated a comparative proteome profile of brain tissues from toxoplasma encephalitis patients co-infected with HIV. Differentially expressed proteins include previously reported and several new proteins in the context of T. gondii and HIV infection, which can be further investigated. Molecular pathways identified to be associated with the disease should enhance our understanding of pathogenesis in toxoplasma encephalitis.

Indexed as

Chronic meningitisImmunosuppressioniTRAQ labelingLTQ-Orbitrap VelosNeuroinfectionsOpportunistic infections

Identifiers

PMID25404878
PMCPMC4232683
OpenAlexW2124939163

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.