Evidence map›Paper›PMID 25404746›Full record

ArticleThe Journal of cell biology2014

Proteomic and 3D structure analyses highlight the C/D box snoRNP assembly mechanism and its control.

Jonathan Bizarro, Christophe Charron, Séverine Boulon, Belinda Westman, Bérengère Pradet-Balade, Franck Vandermoere, Marie-Eve Chagot, Marie Hallais, Yasmeen Ahmad, Heinrich Leonhardt and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 72 citations in OpenAlex.

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  11. NewmedRxiv : the preprint server for health sciences · 2024
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  15. The roles of NOP56 in cancer and SCA36.Pathology oncology research : POR · 2023
    Review
  16. Review
  17. Article
  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 3 countries.

Jonathan BizarroEquipe labellisée Ligue contre le Cancer, Centre National de la Recherche Scientifique Unité Mixte de Recherche 5535, Institut de Génétique Moléculaire de Montpellier, 34293 Montpellier, Cedex 5, France.
Christophe CharronIngénierie Moléculaire et Physiopathologie Articulaire, Centre National de la Recherche Scientifique Unité Mixte de Recherche 7365, Université de Lorraine, Biopôle de l'Université de Lorraine, 54505 Vandoeuvre-les-Nancy Cedex, France.
Séverine BoulonCentre de Recherches de Biochimie Macromoléculaire, Unité Mixte de Recherche 5237, 34293 Montpellier, Cedex 5, France.
Belinda WestmanCentre for Gene Regulation and Expression, University of Dundee, Dundee DD1 5EH, Scotland, UK.
Bérengère Pradet-BaladeEquipe labellisée Ligue contre le Cancer, Centre National de la Recherche Scientifique Unité Mixte de Recherche 5535, Institut de Génétique Moléculaire de Montpellier, 34293 Montpellier, Cedex 5, France.
Franck VandermoereCentre National de la Recherche Scientifique Unité Mixte de Recherche 5203, Institut de Génomique Fonctionnelle, F-34000 Montpellier, France Institut National de la Santé et de la Recherche Médicale, U661, F-34000 Montpellier, France Unité Mixte de Recherche 5203, Université de Montpellier 1 and Université de Montpellier 2, F-34000 Montpellier, France.
Marie-Eve ChagotIngénierie Moléculaire et Physiopathologie Articulaire, Centre National de la Recherche Scientifique Unité Mixte de Recherche 7365, Université de Lorraine, Biopôle de l'Université de Lorraine, 54505 Vandoeuvre-les-Nancy Cedex, France.
Marie HallaisEquipe labellisée Ligue contre le Cancer, Centre National de la Recherche Scientifique Unité Mixte de Recherche 5535, Institut de Génétique Moléculaire de Montpellier, 34293 Montpellier, Cedex 5, France.
Yasmeen AhmadCentre for Gene Regulation and Expression, University of Dundee, Dundee DD1 5EH, Scotland, UK.
Heinrich LeonhardtMunich Center for Integrated Protein Science (CiPS) and Department of Biology, Ludwig Maximilians University Munich, 82152 Planegg-Martinsried, Germany Munich Center for Integrated Protein Science (CiPS) and Department of Biology, Ludwig Maximilians University Munich, 82152 Planegg-Martinsried, Germany.
Angus LamondCentre for Gene Regulation and Expression, University of Dundee, Dundee DD1 5EH, Scotland, UK.
Xavier ManivalIngénierie Moléculaire et Physiopathologie Articulaire, Centre National de la Recherche Scientifique Unité Mixte de Recherche 7365, Université de Lorraine, Biopôle de l'Université de Lorraine, 54505 Vandoeuvre-les-Nancy Cedex, France.
Christiane BranlantIngénierie Moléculaire et Physiopathologie Articulaire, Centre National de la Recherche Scientifique Unité Mixte de Recherche 7365, Université de Lorraine, Biopôle de l'Université de Lorraine, 54505 Vandoeuvre-les-Nancy Cedex, France.
Bruno CharpentierIngénierie Moléculaire et Physiopathologie Articulaire, Centre National de la Recherche Scientifique Unité Mixte de Recherche 7365, Université de Lorraine, Biopôle de l'Université de Lorraine, 54505 Vandoeuvre-les-Nancy Cedex, France.
Céline VerheggenEquipe labellisée Ligue contre le Cancer, Centre National de la Recherche Scientifique Unité Mixte de Recherche 5535, Institut de Génétique Moléculaire de Montpellier, 34293 Montpellier, Cedex 5, France celine.verheggen@igmm.cnrs.fr edouard.bertrand@igmm.cnrs.fr.
Edouard BertrandEquipe labellisée Ligue contre le Cancer, Centre National de la Recherche Scientifique Unité Mixte de Recherche 5535, Institut de Génétique Moléculaire de Montpellier, 34293 Montpellier, Cedex 5, France celine.verheggen@igmm.cnrs.fr edouard.bertrand@igmm.cnrs.fr.
Institut de Génétique Moléculaire de Montpellier · FRIngénierie Moléculaire et Physiopathologie Articulaire · FRUniversity of Dundee · GBCenter for Integrated Protein Science Munich · DECentre de Recherche en Biologie cellulaire de Montpellier · FRCentre National de la Recherche Scientifique · FRUniversité de Montpellier · FR

Funding

Wellcome Trust 073980Wellcome Trust 097945
6 · The paper itself

Abstract

In vitro, assembly of box C/D small nucleolar ribonucleoproteins (snoRNPs) involves the sequential recruitment of core proteins to snoRNAs. In vivo, however, assembly factors are required (NUFIP, BCD1, and the HSP90-R2TP complex), and it is unknown whether a similar sequential scheme applies. In this paper, we describe systematic quantitative stable isotope labeling by amino acids in cell culture proteomic experiments and the crystal structure of the core protein Snu13p/15.5K bound to a fragment of the assembly factor Rsa1p/NUFIP. This revealed several unexpected features: (a) the existence of a protein-only pre-snoRNP complex containing five assembly factors and two core proteins, 15.5K and Nop58; (b) the characterization of ZNHIT3, which is present in the protein-only complex but gets released upon binding to C/D snoRNAs; (c) the dynamics of the R2TP complex, which appears to load/unload RuvBL AAA(+) adenosine triphosphatase from pre-snoRNPs; and (d) a potential mechanism for preventing premature activation of snoRNP catalytic activity. These data provide a framework for understanding the assembly of box C/D snoRNPs.

Indexed as

Amino Acid SequenceATPases Associated with Diverse Cellular ActivitiesBinding SitesCarrier ProteinsCell Line, TumorCrystallography, X-RayDNA-Binding ProteinsDNA HelicasesHEK293 CellsHeLa CellsHSP90 Heat-Shock ProteinsHumansHydrophobic and Hydrophilic InteractionsKruppel-Like Factor 6Kruppel-Like Transcription FactorsNeoplasm ProteinsATPases Associated with Diverse Cellular ActivitiesCarrier ProteinsDNA-Binding ProteinsDNA HelicasesHSP90 Heat-Shock ProteinsKLF6 protein, humanKruppel-Like Factor 6Kruppel-Like Transcription FactorsNeoplasm ProteinsNuclear ProteinsNUFIP1 protein, humanNUFIP2 protein, humanProto-Oncogene ProteinsRibonucleasesRibonucleoproteins, Small NuclearRibonucleoproteins, Small NucleolarRNA-Binding ProteinsRUVBL1 protein, humanRUVBL2 protein, humanSnu13 protein, humanTranscription FactorsZNF331 protein, humanZNHIT3 protein, human

Identifiers

PMID25404746
PMCPMC4242836
OpenAlexW2088225620

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.