Evidence map›Paper›PMID 25404740›Full record

ArticleThe Journal of biological chemistry2015

In vitro reconstitution of Rab GTPase-dependent vesicle clustering by the yeast lethal giant larvae/tomosyn homolog, Sro7.

Guendalina Rossi, Kelly Watson, Mallory Demonch, Brenda Temple, Patrick Brennwald

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Dynamic Partitioning of Synaptic Vesicle Pools by the SNARE-Binding Protein Tomosyn.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2016
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Guendalina RossiFrom the Departments of Cell Biology and Physiology and.
Kelly WatsonFrom the Departments of Cell Biology and Physiology and.
Mallory DemonchFrom the Departments of Cell Biology and Physiology and.
Brenda TempleBiochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599.
Patrick BrennwaldFrom the Departments of Cell Biology and Physiology and pjbrennw@med.unc.edu.
University of North Carolina at Chapel Hill · US

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
REGULATION OF EXOCYTOSIS BY A RHO GTPPASER01GM054712 · NIGMS · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI PATRICK J BRENNWALD · 1998 to 2026
$9.5M
NCI NIH HHS P30 CA016086NIGMS NIH HHS GM-054712NIGMS NIH HHS R01 GM054712
6 · The paper itself

Abstract

Intracellular traffic in yeast between the Golgi and the cell surface is mediated by vesicular carriers that tether and fuse in a fashion that depends on the function of the Rab GTPase, Sec4. Overexpression of either of two Sec4 effectors, Sro7 or Sec15, results in the formation of a cluster of post-Golgi vesicles within the cell. Here, we describe a novel assay that recapitulates post-Golgi vesicle clustering in vitro utilizing purified Sro7 and vesicles isolated from late secretory mutants. We show clustering in vitro closely replicates the in vivo clustering process as it is highly dependent on both Sro7 and GTP-Sec4. We also make use of this assay to characterize a novel mutant form of Sro7 that results in a protein that is specifically defective in vesicle clustering both in vivo and in vitro. We show that this mutation acts by effecting a conformational change in Sro7 from the closed to a more open structure. Our analysis demonstrates that the N-terminal propeller needs to be able to engage the C-terminal tail for vesicle clustering to occur. Consistent with this, we show that occupancy of the N terminus of Sro7 by the t-SNARE Sec9, which results in the open conformation of Sro7, also acts to inhibit vesicle cluster formation by Sro7. This suggests a model by which a conformational switch in Sro7 acts to coordinate Rab-mediated vesicle tethering with SNARE assembly by requiring a single conformational state for both of these processes to occur.

Indexed as

Gene Expression Regulation, FungalAdaptor Proteins, Signal TransducingBiological AssayBiological TransportExocytosisGolgi ApparatusModels, MolecularMutationProtein ConformationQc-SNARE Proteinsrab GTP-Binding ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTransport VesiclesVesicular Transport ProteinsAdaptor Proteins, Signal TransducingQc-SNARE Proteinsrab GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsSEC15 protein, S cerevisiaeSEC4 protein, S cerevisiaeSEC9 protein, S cerevisiaeSRO7 protein, S cerevisiaeVesicular Transport ProteinsExocytosisMembrane ReconstitutionRabTraffickingVesicles

Identifiers

PMID25404740
PMCPMC4281762
OpenAlexW2086329961

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.