Evidence map›Paper›PMID 25404729›Full record

ArticlePlant physiology2015

Proteome analysis of cytoplasmatic and plastidic β-carotene lipid droplets in Dunaliella bardawil.

Lital Davidi, Yishai Levin, Shifra Ben-Dor, Uri Pick

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 101 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Red Light Control of β-Carotene Isomerisation toAntioxidants (Basel, Switzerland) · 2019
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Lital DavidiDepartment of Biological Chemistry (L.D., U.P.), Nancy and Stephen Grand Israel National Center for Personalized Medicine (Y.L.), and Biological Services Unit (S.B.-D.), Weizmann Institute of Science, Rehovot 76100, Israel.
Yishai LevinDepartment of Biological Chemistry (L.D., U.P.), Nancy and Stephen Grand Israel National Center for Personalized Medicine (Y.L.), and Biological Services Unit (S.B.-D.), Weizmann Institute of Science, Rehovot 76100, Israel.
Shifra Ben-DorDepartment of Biological Chemistry (L.D., U.P.), Nancy and Stephen Grand Israel National Center for Personalized Medicine (Y.L.), and Biological Services Unit (S.B.-D.), Weizmann Institute of Science, Rehovot 76100, Israel.
Uri PickDepartment of Biological Chemistry (L.D., U.P.), Nancy and Stephen Grand Israel National Center for Personalized Medicine (Y.L.), and Biological Services Unit (S.B.-D.), Weizmann Institute of Science, Rehovot 76100, Israel uri.pick@weizmann.ac.il.
Weizmann Institute of Science · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The halotolerant green alga Dunaliella bardawil is unique in that it accumulates under stress two types of lipid droplets: cytoplasmatic lipid droplets (CLD) and β-carotene-rich (βC) plastoglobuli. Recently, we isolated and analyzed the lipid and pigment compositions of these lipid droplets. Here, we describe their proteome analysis. A contamination filter and an enrichment filter were utilized to define core proteins. A proteome database of Dunaliella salina/D. bardawil was constructed to aid the identification of lipid droplet proteins. A total of 124 and 42 core proteins were identified in βC-plastoglobuli and CLD, respectively, with only eight common proteins. Dunaliella spp. CLD resemble cytoplasmic droplets from Chlamydomonas reinhardtii and contain major lipid droplet-associated protein and enzymes involved in lipid and sterol metabolism. The βC-plastoglobuli proteome resembles the C. reinhardtii eyespot and Arabidopsis (Arabidopsis thaliana) plastoglobule proteomes and contains carotene-globule-associated protein, plastid-lipid-associated protein-fibrillins, SOUL heme-binding proteins, phytyl ester synthases, β-carotene biosynthesis enzymes, and proteins involved in membrane remodeling/lipid droplet biogenesis: VESICLE-INDUCING PLASTID PROTEIN1, synaptotagmin, and the eyespot assembly proteins EYE3 and SOUL3. Based on these and previous results, we propose models for the biogenesis of βC-plastoglobuli and the biosynthesis of β-carotene within βC-plastoglobuli and hypothesize that βC-plastoglobuli evolved from eyespot lipid droplets.

Indexed as

Algal Proteinsbeta CaroteneChlorophytaCytoplasmLipidsPhylogenyPlastidsProteomeSequence AnalysisAlgal Proteinsbeta CaroteneLipidsProteome

Identifiers

PMID25404729
PMCPMC4281002
OpenAlexW2022381326

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.