Evidence map›Paper›PMID 25404326›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Cytoplasmic HIV-1 RNA is mainly transported by diffusion in the presence or absence of Gag protein.

Jianbo Chen, David Grunwald, Luca Sardo, Andrea Galli, Sergey Plisov, Olga A Nikolaitchik, De Chen, Stephen Lockett, Daniel R Larson, Vinay K Pathak and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
  2. Review
  3. Fluorogenic RNA-based biomaterials for imaging and tracking the cargo of extracellular vesicles.Journal of controlled release : official journal of the Controlled Release Society · 2024
    Article
  4. Review
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  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Visualizing Influenza A Virus vRNA Replication.Frontiers in microbiology · 2022
    Article
  13. Molecular Biology and Diversification of Human Retroviruses.Frontiers in virology (Lausanne, Switzerland) · 2022
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Visualizing the translation and packaging of HIV-1 full-length RNA.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Jianbo ChenViral Recombination Section and.
David GrunwaldRNA Therapeutics Institute and Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605;
Luca SardoViral Recombination Section and.
Andrea GalliViral Recombination Section and.
Sergey PlisovViral Recombination Section and.
Olga A NikolaitchikViral Recombination Section and.
De ChenOptical Microscopy and Analysis Laboratory, Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, MD 21702; and.
Stephen LockettOptical Microscopy and Analysis Laboratory, Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, MD 21702; and.
Daniel R LarsonLaboratory of Receptor Biology and Gene Expression, National Cancer Institute, Bethesda, MD 20892.
Vinay K PathakViral Mutation Section, HIV Drug Resistance Program, Center for Cancer Research, National Cancer Institute, Frederick, MD 21702;
Wei-Shau HuViral Recombination Section and Wei-Shau.Hu@nih.gov.
Global Viral · USFrederick National Laboratory for Cancer Research · USCenter for Cancer Research · USNational Cancer Institute · USUniversity of Massachusetts Chan Medical School · US

Funding

Transcription Dynamics in Single CellsZIABC011383 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI LARSON, DANIEL · 2011 to 2025
$23.8M
Understanding the Pseudodiploidy of the Retroviral GenomeZIABC010814 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI HU, WEI-SHAU · 2009 to 2025
$12.3M
CCR NIH HHS HHSN261200800001CIntramural NIH HHSNCI NIH HHS HHSN261200800001E
6 · The paper itself

Abstract

Full-length HIV-1 RNA plays a central role in viral replication by serving as the mRNA for essential viral proteins and as the genome packaged into infectious virions. Proper RNA trafficking is required for the functions of RNA and its encoded proteins; however, the mechanism by which HIV-1 RNA is transported within the cytoplasm remains undefined. Full-length HIV-1 RNA transport is further complicated when group-specific antigen (Gag) protein is expressed, because a significant portion of HIV-1 RNA may be transported as Gag-RNA complexes, whose properties could differ greatly from Gag-free RNA. In this report, we visualized HIV-1 RNA and monitored its movement in the cytoplasm by using single-molecule tracking. We observed that most of the HIV-1 RNA molecules move in a nondirectional, random-walk manner, which does not require an intact cytoskeletal structure, and that the mean-squared distance traveled by the RNA increases linearly with time, indicative of diffusive movement. We also observed that a single HIV-1 RNA molecule can move at various speeds when traveling through the cytoplasm, indicating that its movement is strongly affected by the immediate environment. To examine the effect of Gag protein on HIV-1 RNA transport, we analyzed the cytoplasmic HIV-1 RNA movement in the presence of sufficient Gag for virion assembly and found that HIV-1 RNA is still transported by diffusion with mobility similar to the mobility of RNAs unable to express functional Gag. These studies define a major mechanism of HIV-1 gene expression and resolve the long-standing question of how the RNA genome is transported to the assembly site.

Indexed as

Actin CytoskeletonAdaptor Proteins, Signal TransducingCytochalasin DCytoplasmDynaminsgag Gene Products, Human Immunodeficiency VirusHeLa CellsHIV-1HumansLuminescent ProteinsMicroscopy, FluorescenceMutationNocodazoleRNA TransportRNA, ViralTime-Lapse ImagingAdaptor Proteins, Signal TransducingCytochalasin DDynaminsgag Gene Products, Human Immunodeficiency VirusLRBA protein, humanLuminescent ProteinsNocodazoleRNA, ViralTubulin ModulatorscytoplasmdiffusionHIV-1RNAtransport

Identifiers

PMID25404326
PMCPMC4260538
OpenAlexW1982666094

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.