Evidence map›Paper›PMID 25404257›Full record

ArticleBMC genomics2014

Structure and decay of a proto-Y region in Tilapia, Oreochromis niloticus.

William J Gammerdinger, Matthew A Conte, Enoch A Acquah, Reade B Roberts, Thomas D Kocher

Abstract read
In one paragraph

Article in BMC genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. Absence ofInternational journal of molecular sciences · 2022
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  5. Article
  6. Origin of a Giant Sex Chromosome.Molecular biology and evolution · 2021
    Article
  7. Article
  8. Disagreement in FMolecular ecology resources · 2020
    Article
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  11. Article
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  17. Review
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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

5 authors.

William J Gammerdinger
Matthew A Conte
Enoch A Acquah
Reade B Roberts
Thomas D KocherDepartment of Biology, University of Maryland, College Park, MD 20742, USA. tdk@umd.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSex-determination genes drive the evolution of adjacent chromosomal regions. Sexually antagonistic selection favors the accumulation of inversions that reduce recombination in regions adjacent to the sex-determination gene. Once established, the clonal inheritance of sex-linked inversions leads to the accumulation of deleterious alleles, repetitive elements and a gradual decay of sex-linked genes. This in turn creates selective pressures for the evolution of mechanisms that compensate for the unequal dosage of gene expression. Here we use whole genome sequencing to characterize the structure of a young sex chromosome and quantify sex-specific gene expression in the developing gonad.

resultsWe found an 8.8 Mb block of strong differentiation between males and females that corresponds to the location of a previously mapped sex-determiner on linkage group 1 of Oreochromis niloticus. Putatively disruptive mutations are found in many of the genes within this region. We also found a significant female-bias in the expression of genes within the block of differentiation compared to those outside the block of differentiation. Eight candidate sex-determination genes were identified within this region.

conclusionsThis study demonstrates a block of differentiation on linkage group 1, suggestive of an 8.8 Mb inversion encompassing the sex-determining locus. The enrichment of female-biased gene expression inside the proposed inversion suggests incomplete dosage compensation. This study helps establish a model for studying the early-to-intermediate stages of sex chromosome evolution.

Indexed as

Genetic LinkageAnimalsCichlidsFemaleGene Expression RegulationGenetic LociGenetics, PopulationGenomeMaleModels, GeneticMutation, MissensePolymorphism, Single NucleotideSequence Analysis, DNASex Determination Processes

Identifiers

PMID25404257
PMCPMC4251933

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.