Evidence map›Paper›PMID 25403489›Full record

ArticleMolecular and cellular biology2015

Insertion of an imprinted insulator into the IgH locus reveals developmentally regulated, transcription-dependent control of V(D)J recombination.

Nadine Puget, Ryutaro Hirasawa, Ngoc-Sa Nguyen Hu, Nathalie Laviolette-Malirat, Robert Feil, Ahmed Amine Khamlichi

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 1 country.

Nadine PugetCNRS UMR5089, Institut de Pharmacologie et de Biologie Structurale (IBPS), Toulouse, France Université de Toulouse, UPS, Institut de Pharmacologie et de Biologie Structurale (IPBS), Toulouse, France.
Ryutaro HirasawaInstitute of Molecular Genetics (IGMM), CNRS UMR5535, and University of Montpellier I & II, Montpellier, France.
Ngoc-Sa Nguyen HuCNRS UMR5089, Institut de Pharmacologie et de Biologie Structurale (IBPS), Toulouse, France Université de Toulouse, UPS, Institut de Pharmacologie et de Biologie Structurale (IPBS), Toulouse, France.
Nathalie Laviolette-MaliratCNRS UMR5089, Institut de Pharmacologie et de Biologie Structurale (IBPS), Toulouse, France Université de Toulouse, UPS, Institut de Pharmacologie et de Biologie Structurale (IPBS), Toulouse, France.
Robert FeilInstitute of Molecular Genetics (IGMM), CNRS UMR5535, and University of Montpellier I & II, Montpellier, France robert.feil@igmm.cnrs.fr ahmed.khamlichi@ipbs.fr.
Ahmed Amine KhamlichiCNRS UMR5089, Institut de Pharmacologie et de Biologie Structurale (IBPS), Toulouse, France Université de Toulouse, UPS, Institut de Pharmacologie et de Biologie Structurale (IPBS), Toulouse, France robert.feil@igmm.cnrs.fr ahmed.khamlichi@ipbs.fr.
Institut de Pharmacologie et de Biologie Structurale · FRCentre National de la Recherche Scientifique · FRInstitut de Génétique Moléculaire de Montpellier · FRUniversité Fédérale de Toulouse Midi-Pyrénées · FRUniversité Toulouse III - Paul Sabatier · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The assembly of antigen receptor loci requires a developmentally regulated and lineage-specific recombination between variable (V), diversity (D), and joining (J) segments through V(D)J recombination. The process is regulated by accessibility control elements, including promoters, insulators, and enhancers. The IgH locus undergoes two recombination steps, D-J(H) and then V(H)-DJ(H), but it is unclear how the availability of the DJ(H) substrate could influence the subsequent V(H)-DJ(H) recombination step. The Eμ enhancer plays a critical role in V(D)J recombination and controls a set of sense and antisense transcripts. We epigenetically perturbed the early events at the IgH locus by inserting the imprinting control region (ICR) of the Igf2/H19 locus or a transcriptional insulator devoid of the imprinting function upstream of the Eμ enhancer. The insertions recapitulated the main epigenetic features of their endogenous counterparts, including differential DNA methylation and binding of CTCF/cohesins. Whereas the D-J(H) recombination step was unaffected, both the insulator insertions led to a severe impairment of V(H)-DJ(H) recombination. Strikingly, the inhibition of V(H)-DJ(H) recombination correlated consistently with a strong reduction of DJ(H) transcription and incomplete demethylation. Thus, developmentally regulated transcription following D-J(H) recombination emerges as an important mechanism through which the Eμ enhancer controls V(H)-DJ(H) recombination.

Indexed as

Transcription, GeneticAnimalsDNA MethylationEnhancer Elements, GeneticGene Expression RegulationGenes, Immunoglobulin Heavy ChainGenetic LociImmunoglobulin Heavy ChainsImmunoglobulin Variable RegionMiceRecombination, GeneticV(D)J RecombinationImmunoglobulin Heavy ChainsImmunoglobulin Variable Region

Identifiers

PMID25403489
PMCPMC4285425
OpenAlexW2136889520

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.