Evidence map›Paper›PMID 25403145›Full record

ArticleNature communications2014

Hepatitis C virus genetics affects miR-122 requirements and response to miR-122 inhibitors.

Benjamin Israelow, Gavriel Mullokandov, Judith Agudo, Marion Sourisseau, Ali Bashir, Andres Y Maldonado, Arvin C Dar, Brian D Brown, Matthew J Evans

Open access · bronzeAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 71 citations in OpenAlex.

  1. Article
  2. Identification of claudin-3 as an entry factor for rat hepacivirus.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
  4. Article
  5. MicroRNAs in chronic pediatric diseases (Review).Experimental and therapeutic medicine · 2024
    Review
  6. Article
  7. Article
  8. PLK1-ELAVL1/HuR-miR-122 signaling facilitates hepatitis C virus proliferation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Review
  10. Article
  11. Epigenetic regulation of energy metabolism in obesity.Journal of molecular cell biology · 2021
    Review
  12. miR-122-based therapies select for three distinct resistance mechanisms based on alterations in RNA structure.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Benjamin IsraelowDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1124, New York, New York 10029, USA.
Gavriel MullokandovDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1124, New York, New York 10029, USA.
Judith AgudoDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1124, New York, New York 10029, USA.
Marion SourisseauDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1124, New York, New York 10029, USA.
Ali BashirDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1124, New York, New York 10029, USA.
Andres Y MaldonadoDepartment of Oncological Sciences, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1124, New York, New York 10029, USA.
Arvin C DarDepartment of Oncological Sciences, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1124, New York, New York 10029, USA.
Brian D Brown1] Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1124, New York, New York 10029, USA [2] Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1124, New York, New York 10029, USA [3] Diabetes, Metabolism and Obesity Institute, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1124, New York, New York 10029, USA [4] Child Health and Development Institute, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1124, New York, New York 10029, USA.
Matthew J EvansDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1124, New York, New York 10029, USA.
Icahn School of Medicine at Mount Sinai · US

Funding

TRAINING PROGRAM: MECHANISMS OF VIRUS-HOST INTERACTIONST32AI007647 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI Domenico Tortorella · 2000 to 2026
$11.5M
Targeting Ras-Dependent Cancers with a Chemical Switch for an Inactive KinaseDP2CA186570 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI DAR, ARVIN · 2013 to 2017
$2.7M
Post-transcriptional regulation of the Dendritic Cell transcriptomeR01AI104848 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BROWN, BRIAN D, MERAD, MIRIAM · 2013 to 2017
$2.3M
Hepatitis C virus polarized cell entry pathwaysR01DK095125 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI EVANS, MATTHEW J · 2012 to 2016
$1.8M
Sensor-seq: A genome-wide biological measure of microRNA activity.R33CA182377 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BROWN, BRIAN D, SACHIDANANDAM, RAVI · 2013 to 2015
$1.0M
Studies of hepatitis C virus polarized cell entry and host factor requirementsR00AI077800 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI EVANS, MATTHEW J · 2009 to 2010
$498k
Occludin-specific HCV cell entry mechanismsR56AI091792 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI EVANS, MATTHEW J · 2011 to 2011
$421k
The Role of miRNA in Dendritic Cell FunctionF30HL119039 · NHLBI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI MULLOKANDOV, GREGORY · 2013 to 2016
$166k
Hepatitis C Virus interaction with the innate immune system in HepG2-HFL cellsF30DK096892 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI GOLDMAN-ISRAELOW, BENJAMIN · 2012 to 2014
$142k
NCI NIH HHS DP2 CA186570NCI NIH HHS R33 CA182377NCI NIH HHS R33CA182377NHLBI NIH HHS F30 HL119039NHLBI NIH HHS F30HL119039NIAID NIH HHS AI07647NIAID NIH HHS R00 AI077800NIAID NIH HHS R00AI077800NIAID NIH HHS R01 AI104848NIAID NIH HHS R01AI104848NIAID NIH HHS R56 AI091792NIAID NIH HHS R56AI091792NIAID NIH HHS T32 AI007647NIDDK NIH HHS F30 DK096892NIDDK NIH HHS F30DK096892NIDDK NIH HHS R01 DK095125NIDDK NIH HHS R01DK095125
6 · The paper itself

Abstract

Hepatitis C virus (HCV) replication is dependent on a liver-specific microRNA (miRNA), miR-122. A recent clinical trial reported that transient inhibition of miR-122 reduced viral titres in HCV-infected patients. Here we set out to better understand how miR-122 inhibition influences HCV replication over time. Unexpectedly, we observed the emergence of an HCV variant that is resistant to miR-122 knockdown. Next-generation sequencing revealed that this was due to a single nucleotide change at position 28 (G28A) of the HCV genome, which falls between the two miR-122 seed-binding sites. Naturally occurring HCV isolates encoding G28A are similarly resistant to miR-122 inhibition, indicating that subtle differences in viral sequence, even outside the seed-binding site, greatly influence HCV's miR-122 concentration requirement. In addition, we found that HCV itself reduces miR-122's activity in the cell, possibly through binding and sequestering miR-122. Our study provides insight into the interaction between miR-122 and HCV, including viral adaptation to reduced miR-122 bioavailability, and has implications for the development of anti-miR-122-based HCV drugs.

Indexed as

Point MutationBase SequenceHepacivirusHepatitis CHumansLiverMicroRNAsMolecular Sequence DataVirus ReplicationMicroRNAsMIRN122 microRNA, human

Identifiers

PMID25403145
PMCPMC4236719
OpenAlexW2091560359

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.