Evidence map›Paper›PMID 25402455›Full record

ArticlePloS one2014

The transcriptional response to oxidative stress during vertebrate development: effects of tert-butylhydroquinone and 2,3,7,8-tetrachlorodibenzo-p-dioxin.

Mark E Hahn, Andrew G McArthur, Sibel I Karchner, Diana G Franks, Matthew J Jenny, Alicia R Timme-Laragy, John J Stegeman, Bruce R Woodin, Michael J Cipriano, Elwood Linney

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it, 54 citations in OpenAlex.

  1. The Transcriptome of the Zebrafish Embryo After Chemical Exposure: A Meta-Analysis.Toxicological sciences : an official journal of the Society of Toxicology · 2017
    Pooled it
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  14. A Review of the Functional Roles of the Zebrafish Aryl Hydrocarbon Receptors.Toxicological sciences : an official journal of the Society of Toxicology · 2020
    Review
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  19. CuChemical science · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Mark E HahnBiology Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, United States of America.
Andrew G McArthurJosephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, Massachusetts, United States of America.
Sibel I KarchnerBiology Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, United States of America.
Diana G FranksBiology Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, United States of America.
Matthew J JennyBiology Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, United States of America.
Alicia R Timme-LaragyBiology Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, United States of America.
John J StegemanBiology Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, United States of America.
Bruce R WoodinBiology Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, United States of America.
Michael J CiprianoJosephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, Massachusetts, United States of America.
Elwood LinneyDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina, United States of America.
Woods Hole Oceanographic Institution · USMarine Biological Laboratory · USDuke Medical Center · US

Funding

Training CoreP42ES007381 · NIEHS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI SHERR, DAVID H · 1995 to 2019
$46.1M
AHR Signaling in Mammalian and Non-Mammalian ModelsR01ES006272 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI HAHN, MARK E · 1999 to 2014
$4.1M
CYP Genes and the Generation of Oxidative StressR01ES015912 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI STEGEMAN, JOHN J · 2007 to 2011
$3.1M
Mechanisms of Embryo Response to Oxidative StressR01ES016366 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI HAHN, MARK E · 2009 to 2013
$1.9M
Differential Sensitivity to Oxidative Stress during Embryonic DevelopmentF32ES017585 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI TIMME-LARAGY, ALICIA R · 2009 to 2011
$154k
NIEHS NIH HHS F32 ES017585NIEHS NIH HHS F32ES017585NIEHS NIH HHS P42 ES007381NIEHS NIH HHS R01 ES006272NIEHS NIH HHS R01ES006272NIEHS NIH HHS R01 ES015912NIEHS NIH HHS R01ES015912NIEHS NIH HHS R01 ES016366NIEHS NIH HHS R01ES016366
6 · The paper itself

Abstract

Oxidative stress is an important mechanism of chemical toxicity, contributing to teratogenesis and to cardiovascular and neurodegenerative diseases. Developing animals may be especially sensitive to chemicals causing oxidative stress. The developmental expression and inducibility of anti-oxidant defenses through activation of NF-E2-related factor 2 (NRF2) affect susceptibility to oxidants, but the embryonic response to oxidants is not well understood. To assess the response to chemically mediated oxidative stress and how it may vary during development, zebrafish embryos, eleutheroembryos, or larvae at 1, 2, 3, 4, 5, and 6 days post fertilization (dpf) were exposed to DMSO (0.1%), tert-butylhydroquinone (tBHQ; 10 µM) or 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD; 2 nM) for 6 hr. Transcript abundance was assessed by real-time qRT-PCR and microarray. qRT-PCR showed strong (4- to 5-fold) induction of gstp1 by tBHQ as early as 1 dpf. tBHQ also induced gclc (2 dpf), but not sod1, nqo1, or cyp1a. TCDD induced cyp1a but none of the other genes. Microarray analysis showed that 1477 probes were significantly different among the DMSO-, tBHQ-, and TCDD-treated eleutheroembryos at 4 dpf. There was substantial overlap between genes induced in developing zebrafish and a set of marker genes induced by oxidative stress in mammals. Genes induced by tBHQ in 4-dpf zebrafish included those involved in glutathione synthesis and utilization, signal transduction, and DNA damage/stress response. The strong induction of hsp70 determined by microarray was confirmed by qRT-PCR and by use of transgenic zebrafish expressing enhanced green fluorescent protein (EGFP) under control of the hsp70 promoter. Genes strongly down-regulated by tBHQ included mitfa, providing a molecular explanation for the loss of pigmentation in tBHQ-exposed embryos. These data show that zebrafish embryos are responsive to oxidative stress as early as 1 dpf, that responsiveness varies with development in a gene-specific manner, and that the oxidative stress response is substantially conserved in vertebrate animals.

Indexed as

AnimalsAnimals, Genetically ModifiedAntioxidantsEmbryo, NonmammalianGene Expression ProfilingGene Expression Regulation, DevelopmentalHydroquinonesOxidation-ReductionOxidative StressPolychlorinated DibenzodioxinsTeratogensZebrafishZebrafish Proteins2-tert-butylhydroquinoneAntioxidantsHydroquinonesPolychlorinated DibenzodioxinsTeratogensZebrafish Proteins

Identifiers

PMID25402455
PMCPMC4234671
OpenAlexW2004574865

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.