Evidence map›Paper›PMID 25402344›Full record

ArticlePloS one2014

Hibiscus chlorotic ringspot virus coat protein is essential for cell-to-cell and long-distance movement but not for viral RNA replication.

Shengniao Niu, Francisco M Gil-Salas, Sunil Kumar Tewary, Ashwin Kuppusamy Samales, John Johnson, Kunchithapadam Swaminathan, Sek-Man Wong

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 4 countries.

Shengniao NiuDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore; Key Laboratory of Tropical Crop Biotechnology, Ministry of Agriculture, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Science, Hainan, China.
Francisco M Gil-SalasDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore; Instituto Andaluz de Investigación y Formación Agraria, Pesquera, Alimentaria y de la Producción Ecológica, Almería, Spain.
Sunil Kumar TewaryDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore.
Ashwin Kuppusamy SamalesDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore.
John JohnsonDepartment of Molecular Biology, The Scripps Research Institute, California, United States of America.
Kunchithapadam SwaminathanDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore.
Sek-Man WongDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore; Temasek Life Sciences Laboratory, Singapore, Singapore; National University of Singapore Suzhou Research Institute, Suzhou Industrial Park, Jiangsu, China.
National University of Singapore · SGAndalusian Institute of Agricultural and Fisheries Research and Training · ESChinese Academy of Tropical Agricultural Sciences · CNScripps Research Institute · USSuzhou Research Institute · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hibiscus chlorotic ringspot virus (HCRSV) is a member of the genus Carmovirus in the family Tombusviridae. In order to study its coat protein (CP) functions on virus replication and movement in kenaf (Hibiscus cannabinus L.), two HCRSV mutants, designated as p2590 (A to G) in which the first start codon ATG was replaced with GTG and p2776 (C to G) in which proline 63 was replaced with alanine, were constructed. In vitro transcripts of p2590 (A to G) were able to replicate to a similar level as wild type without CP expression in kenaf protoplasts. However, its cell-to-cell movement was not detected in the inoculated kenaf cotyledons. Structurally the proline 63 in subunit C acts as a kink for β-annulus formation during virion assembly. Progeny of transcripts derived from p2776 (C to G) was able to move from cell-to-cell in inoculated cotyledons but its long-distance movement was not detected. Virions were not observed in partially purified mutant virus samples isolated from 2776 (C to G) inoculated cotyledons. Removal of the N-terminal 77 amino acids of HCRSV CP by trypsin digestion of purified wild type HCRSV virions resulted in only T = 1 empty virus-like particles. Taken together, HCRSV CP is dispensable for viral RNA replication but essential for cell-to-cell movement, and virion is required for the virus systemic movement. The proline 63 is crucial for HCRSV virion assembly in kenaf plants and the N-terminal 77 amino acids including the β-annulus domain is required in T = 3 assembly in vitro.

Indexed as

Cell CommunicationCell MovementVirus ReplicationAmino Acid SequenceBase SequenceCapsid ProteinsCarmovirusHibiscusMolecular Sequence DataReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionRNA, MessengerRNA, ViralVirionCapsid ProteinsRNA, MessengerRNA, Viral

Identifiers

PMID25402344
PMCPMC4234673
OpenAlexW2044070390

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.