Evidence map›Paper›PMID 25401762›Full record

ArticlePloS one2014

Transcriptome-based identification of ABC transporters in the western tarnished plant bug Lygus hesperus.

J Joe Hull, Kendrick Chaney, Scott M Geib, Jeffrey A Fabrick, Colin S Brent, Douglas Walsh, Laura Corley Lavine

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 53 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

J Joe HullUSDA-ARS, Arid Land Agricultural Research Center, Maricopa, Arizona, United States of America.
Kendrick ChaneyUSDA-ARS, Arid Land Agricultural Research Center, Maricopa, Arizona, United States of America.
Scott M GeibUSDA-ARS, Daniel K. Inouye Pacific Basin Agricultural Research Center, Hilo, Hawaii, United States of America.
Jeffrey A FabrickUSDA-ARS, Arid Land Agricultural Research Center, Maricopa, Arizona, United States of America.
Colin S BrentUSDA-ARS, Arid Land Agricultural Research Center, Maricopa, Arizona, United States of America.
Douglas WalshDept. of Entomology, Washington State University, Pullman, Washington, United States of America.
Laura Corley LavineDept. of Entomology, Washington State University, Pullman, Washington, United States of America.
U.S. Arid Land Agricultural Research Center · USWashington State University · USDaniel K. Inouye U.S. Pacific Basin Agricultural Research Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ATP-binding cassette (ABC) transporters are a large superfamily of proteins that mediate diverse physiological functions by coupling ATP hydrolysis with substrate transport across lipid membranes. In insects, these proteins play roles in metabolism, development, eye pigmentation, and xenobiotic clearance. While ABC transporters have been extensively studied in vertebrates, less is known concerning this superfamily in insects, particularly hemipteran pests. We used RNA-Seq transcriptome sequencing to identify 65 putative ABC transporter sequences (including 36 full-length sequences) from the eight ABC subfamilies in the western tarnished plant bug (Lygus hesperus), a polyphagous agricultural pest. Phylogenetic analyses revealed clear orthologous relationships with ABC transporters linked to insecticide/xenobiotic clearance and indicated lineage specific expansion of the L. hesperus ABCG and ABCH subfamilies. The transcriptional profile of 13 LhABCs representative of the ABCA, ABCB, ABCC, ABCG, and ABCH subfamilies was examined across L. hesperus development and within sex-specific adult tissues. All of the transcripts were amplified from both reproductively immature and mature adults and all but LhABCA8 were expressed to some degree in eggs. Expression of LhABCA8 was spatially localized to the testis and temporally timed with male reproductive development, suggesting a potential role in sexual maturation and/or spermatozoa protection. Elevated expression of LhABCC5 in Malpighian tubules suggests a possible role in xenobiotic clearance. Our results provide the first transcriptome-wide analysis of ABC transporters in an agriculturally important hemipteran pest and, because ABC transporters are known to be important mediators of insecticidal resistance, will provide the basis for future biochemical and toxicological studies on the role of this protein family in insecticide resistance in Lygus species.

Indexed as

TranscriptomeAnimalsATP-Binding Cassette TransportersHeteropteraPhylogenyATP-Binding Cassette Transporters

Identifiers

PMID25401762
PMCPMC4234516
OpenAlexW2092987873

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.