Evidence map›Paper›PMID 25401073›Full record

ArticleAMB Express2014

Stepwise enhancement of catalytic performance of haloalkane dehalogenase LinB towards β-hexachlorocyclohexane.

Ryota Moriuchi, Hiroki Tanaka, Yuki Nikawadori, Mayuko Ishitsuka, Michihiro Ito, Yoshiyuki Ohtsubo, Masataka Tsuda, Jiri Damborsky, Zbynek Prokop, Yuji Nagata

Abstract read
In one paragraph

Article in AMB Express, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. A mechanistic view of enzyme evolution.Protein science : a publication of the Protein Society · 2020
    Review
  5. Article
  6. How mutational epistasis impairs predictability in protein evolution and design.Protein science : a publication of the Protein Society · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ryota MoriuchiDepartment of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan ; The United Graduate School of Agricultural Science, Gifu University 1-1 Yanagido, Gifu 501-1193, Japan.
Hiroki TanakaDepartment of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan.
Yuki NikawadoriDepartment of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan.
Mayuko IshitsukaDepartment of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan.
Michihiro ItoDepartment of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan ; Consolidated Research Institute for Advanced Science and Medical Care, Waseda University, 2-2 Wakamatsu-cho, Shinjuku, Tokyo 162-8480, Japan.
Yoshiyuki OhtsuboDepartment of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan.
Masataka TsudaDepartment of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan.
Jiri DamborskyLoschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment RECETOX, Faculty of Science, Masaryk University, Kamenice 5/A13, Brno, 625 00, Czech Republic.
Zbynek ProkopLoschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment RECETOX, Faculty of Science, Masaryk University, Kamenice 5/A13, Brno, 625 00, Czech Republic.
Yuji NagataDepartment of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two haloalkane dehalogenases, LinBUT and LinBMI, each with 296 amino acid residues, exhibit only seven amino acid residue differences between them, but LinBMI's catalytic performance towards β-hexachlorocyclohexane (β-HCH) is considerably higher than LinBUT's. To elucidate the molecular basis governing this difference, intermediate mutants between LinBUT and LinBMI were constructed and kinetically characterized. The activities of LinBUT-based mutants gradually increased by cumulative mutations into LinBUT, and the effects of the individual amino acid substitutions depended on combination with other mutations. These results indicated that LinBUT's β-HCH degradation activity can be enhanced in a stepwise manner by the accumulation of point mutations.

Indexed as

BiodegradationHaloalkane dehalogenaseProtein evolutionXenobioticsβ-Hexachlorocyclohexane

Identifiers

PMID25401073
PMCPMC4230811

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.