Evidence map›Paper›PMID 25400903›Full record

ArticleJournal of venom research2014

Plectreurys tristis venome: A proteomic and transcriptomic analysis.

Pamela A Zobel-Thropp, Emily Z Thomas, Cynthia L David, Linda A Breci, Greta J Binford

Open access · greenAbstract read
In one paragraph

Article in Journal of venom research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Pamela A Zobel-ThroppDepartment of Biology, Lewis & Clark College, Portland, OR 97219, USA.
Emily Z ThomasDepartment of Biology, Lewis & Clark College, Portland, OR 97219, USA.
Cynthia L DavidArizona Proteomics Consortium, University of Arizona, Tucson, AZ 85721, USA.
Linda A BreciArizona Proteomics Consortium, University of Arizona, Tucson, AZ 85721, USA.
Greta J BinfordDepartment of Biology, Lewis & Clark College, Portland, OR 97219, USA.
Lewis & Clark College · USUniversity of Arizona · US

Funding

VITAMIN AP30CA023074 · NCI · UNIVERSITY OF ARIZONA · PI Dan Theodorescu · 1985 to 2026
$110.2M
SOUTHWEST ENVIRONMENTAL HEALTH SCIENCES CENTERP30ES006694 · NIEHS · UNIVERSITY OF ARIZONA · PI DEAN BILLHEIMER · 1994 to 2026
$36.7M
Acquisition of a LTQ Orbitrap XL ETD Hybrid FT Mass SpectrometerS10RR028868 · NCRR · UNIVERSITY OF ARIZONA · PI TSAPRAILIS, GEORGE · 2010 to 2010
$916k
Comparative "venomes" of recluse spiders and their kin: treatments and toxin discR15GM097696 · NIGMS · LEWIS AND CLARK COLLEGE · PI BINFORD, GRETA JEANNE · 2011 to 2015
$527k
NCI NIH HHS P30 CA023074NCRR NIH HHS S10 RR028868NIEHS NIH HHS P30 ES006694NIGMS NIH HHS R15 GM097696
6 · The paper itself

Abstract

Spider venoms are complex cocktails rich in peptides, proteins and organic molecules that collectively act to immobilize prey. Venoms of the primitive hunting spider, Plectreurys tristis, have numerous neurotoxic peptides called "plectoxins" (PLTX), a unique acylpolyamine called bis(agmatine)oxalamide, and larger unidentified protein components. These spiders also have unconventional multi-lobed venom glands. Inspired by these unusual characteristics and their phylogenetic position as Haplogynes, we have partially characterized the venome of P. tristis using combined transcriptomic and proteomic methods. With these analyses we found known venom neurotoxins U1-PLTX-Pt1a, U3-PLTX-Pt1a, and we discovered new groups of potential neurotoxins, expanding the U1- and ω-PLTX families and adding U4-through U9-PLTX as six new groups. The venom also contains proteins that are homologs of astacin metalloproteases that, combined with venom peptides, make up 94% of components detected in crude venom, while the remaining 6% is a single undescribed protein with unknown function. Other proteins detected in the transcriptome were found to be members of conserved gene families and make up 20% of the transcripts. These include cDNA sequences that match venom proteins from Mesobuthus and Hottentotta scorpions, Loxosceles and Dysdera spiders, and also salivary and secreted peptide sequences from Ixodes, Amblyomma and Rhipicephalus ticks. Finally, we show that crude venom has neurotoxic effects and an effective paralytic dose on crickets of 3.3µg/gm.

Indexed as

astacin metalloproteasecDNA libraryneurotoxinOrbitrap mass spectrometryPD50Spidervenom

Identifiers

PMID25400903
PMCPMC4231235
OpenAlexW2253761148

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.