ArticleFrontiers in plant science2014
Early insights into the genome sequence of Uromyces fabae.
Article in Frontiers in plant science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed, 23 citations in OpenAlex.
- Population structure and genetic diversity of Phakopsora pachyrhizi in the Southeastern United States.G3 (Bethesda, Md.) · 2026Article
- Developing a crop- wild-reservoir pathogen system to understand pathogen evolution and emergence.eLife · 2025Article
- Identification and Characterization of Resistance to Rust in Lentil and Its Wild Relatives.Plants (Basel, Switzerland) · 2023Article
- Rust (Genes · 2023Review
- A Global Overview of Diversity and Phylogeny of the Rust GenusJournal of fungi (Basel, Switzerland) · 2022Review
- The coffee leaf rust pathogen Hemileia vastatrix: one and a half centuries around the tropics.Molecular plant pathology · 2017Review
- Regulation of the fungal secretome.Current genetics · 2016Review
- OcculterCut: A Comprehensive Survey of AT-Rich Regions in Fungal Genomes.Genome biology and evolution · 2016Article
- Flow cytometry reveals that the rust fungus, Uromyces bidentis (Pucciniales), possesses the largest fungal genome reported--2489 Mbp.Molecular plant pathology · 2015Article
- Article
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Authors and funding
3 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Uromyces fabae is a major pathogen of broad bean, Vicia faba. U. fabae has served as a model among rust fungi to elucidate the development of infection structures, expression and secretion of cell wall degrading enzymes and gene expression. Using U. fabae, enormous progress was made regarding nutrient uptake and metabolism and in the search for secreted proteins and effectors. Here, we present results from a genome survey of U. fabae. Paired end Illumina sequencing provided 53 Gb of data. An assembly gave 59,735 scaffolds with a total length of 216 Mb. K-mer analysis estimated the genome size to be 329 Mb. Of a representative set of 23,153 predicted proteins we could annotate 10,209, and predict 599 secreted proteins. Clustering of the protein set indicates families of highly likely effectors. We also found new homologs of RTP1p, a prototype rust effector. The U. fabae genome will be an important resource for comparative analyses with U. appendiculatus and P. pachyrhizi and provide information regarding the phylogenetic relationship of the genus Uromyces with respect to other rust fungi already sequenced, namely Puccinia graminis f. sp. tritici, P. striiformis f. sp. tritici, Melampsora lini, and Melampsora larici-populina.
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